Pulling all pending Bukkit-JavaDoc changes

11 files changed, 1057 insertions, 96 deletions

diff --git a/src/main/java/org/bukkit/Bukkit.java b/src/main/java/org/bukkit/Bukkit.java
index 005085a9..f389fc0c 100644
--- a/src/main/java/org/bukkit/Bukkit.java
+++ b/src/main/java/org/bukkit/Bukkit.java
@@ -65,338 +65,590 @@ public final class Bukkit {
         server.getLogger().info("This server is running " + getName() + " version " + getVersion() + " (Implementing API version " + getBukkitVersion() + ")");
     }
 
+    /**
+     * @see Server#getName()
+     */
     public static String getName() {
         return server.getName();
     }
 
+    /**
+     * @see Server#getVersion()
+     */
     public static String getVersion() {
         return server.getVersion();
     }
 
+    /**
+     * @see Server#getBukkitVersion()
+     */
     public static String getBukkitVersion() {
         return server.getBukkitVersion();
     }
 
+    /**
+     * @see Server#getOnlinePlayers()
+     */
     public static Player[] getOnlinePlayers() {
         return server.getOnlinePlayers();
     }
 
+    /**
+     * @see Server#getMaxPlayers()
+     */
     public static int getMaxPlayers() {
         return server.getMaxPlayers();
     }
 
+    /**
+     * @see Server#getPort()
+     */
     public static int getPort() {
         return server.getPort();
     }
 
+    /**
+     * @see Server#getViewDistance()
+     */
     public static int getViewDistance() {
         return server.getViewDistance();
     }
 
+    /**
+     * @see Server#getIp()
+     */
     public static String getIp() {
         return server.getIp();
     }
 
+    /**
+     * @see Server#getServerName()
+     */
     public static String getServerName() {
         return server.getServerName();
     }
 
+    /**
+     * @see Server#getServerId()
+     */
     public static String getServerId() {
         return server.getServerId();
     }
 
+    /**
+     * @see Server#getWorldType()
+     */
     public static String getWorldType() {
         return server.getWorldType();
     }
 
+    /**
+     * @see Server#getGenerateStructures()
+     */
     public static boolean getGenerateStructures() {
         return server.getGenerateStructures();
     }
 
+    /**
+     * @see Server#getAllowNether()
+     */
     public static boolean getAllowNether() {
         return server.getAllowNether();
     }
 
+    /**
+     * @see Server#hasWhitelist()
+     */
     public static boolean hasWhitelist() {
         return server.hasWhitelist();
     }
 
+    /**
+     * @see Server#broadcastMessage(String message)
+     */
     public static int broadcastMessage(String message) {
         return server.broadcastMessage(message);
     }
 
+    /**
+     * @see Server#getUpdateFolder()
+     */
     public static String getUpdateFolder() {
         return server.getUpdateFolder();
     }
 
+    /**
+     * @see Server#getPlayer(String name)
+     */
     public static Player getPlayer(String name) {
         return server.getPlayer(name);
     }
 
+    /**
+     * @see Server#matchPlayer(String name)
+     */
     public static List<Player> matchPlayer(String name) {
         return server.matchPlayer(name);
     }
 
+    /**
+     * @see Server#getPluginManager()
+     */
     public static PluginManager getPluginManager() {
         return server.getPluginManager();
     }
 
+    /**
+     * @see Server#getScheduler()
+     */
     public static BukkitScheduler getScheduler() {
         return server.getScheduler();
     }
 
+    /**
+     * @see Server#getServicesManager()
+     */
     public static ServicesManager getServicesManager() {
         return server.getServicesManager();
     }
 
+    /**
+     * @see Server#getWorlds()
+     */
     public static List<World> getWorlds() {
         return server.getWorlds();
     }
 
+    /**
+     * @see Server#createWorld(WorldCreator options)
+     */
     public static World createWorld(WorldCreator options) {
         return server.createWorld(options);
     }
 
+    /**
+     * @see Server#unloadWorld(String name, boolean save)
+     */
     public static boolean unloadWorld(String name, boolean save) {
         return server.unloadWorld(name, save);
     }
 
+    /**
+     * @see Server#unloadWorld(World world, boolean save)
+     */
     public static boolean unloadWorld(World world, boolean save) {
         return server.unloadWorld(world, save);
     }
 
+    /**
+     * @see Server#getWorld(String name)
+     */
     public static World getWorld(String name) {
         return server.getWorld(name);
     }
 
+    /**
+     * @see Server#getWorld(UUID uid)
+     */
     public static World getWorld(UUID uid) {
         return server.getWorld(uid);
     }
 
+    /**
+     * @see Server#getMap(short id)
+     */
     public static MapView getMap(short id) {
         return server.getMap(id);
     }
 
+    /**
+     * @see Server#createMap(World world)
+     */
     public static MapView createMap(World world) {
         return server.createMap(world);
     }
 
+    /**
+     * @see Server#reload()
+     */
     public static void reload() {
         server.reload();
     }
 
+    /**
+     * @see Server#getLogger()
+     */
     public static Logger getLogger() {
         return server.getLogger();
     }
 
+    /**
+     * @see Server#getPluginCommand(String name)
+     */
     public static PluginCommand getPluginCommand(String name) {
         return server.getPluginCommand(name);
     }
 
+    /**
+     * @see Server#savePlayers()
+     */
     public static void savePlayers() {
         server.savePlayers();
     }
 
+    /**
+     * @see Server#dispatchCommand(CommandSender sender, String commandLine)
+     */
     public static boolean dispatchCommand(CommandSender sender, String commandLine) {
         return server.dispatchCommand(sender, commandLine);
     }
 
+    /**
+     * @see Server#configureDbConfig(ServerConfig config)
+     */
     public static void configureDbConfig(ServerConfig config) {
         server.configureDbConfig(config);
     }
 
+    /**
+     * @see Server#addRecipe(Recipe recipe)
+     */
     public static boolean addRecipe(Recipe recipe) {
         return server.addRecipe(recipe);
     }
 
+    /**
+     * @see Server#getRecipesFor(ItemStack result)
+     */
     public static List<Recipe> getRecipesFor(ItemStack result) {
         return server.getRecipesFor(result);
     }
 
+    /**
+     * @see Server#recipeIterator()
+     */
     public static Iterator<Recipe> recipeIterator() {
         return server.recipeIterator();
     }
 
+    /**
+     * @see Server#clearRecipes()
+     */
     public static void clearRecipes() {
         server.clearRecipes();
     }
 
+    /**
+     * @see Server#resetRecipes()
+     */
     public static void resetRecipes() {
         server.resetRecipes();
     }
 
+    /**
+     * @see Server#getCommandAliases()
+     */
     public static Map<String, String[]> getCommandAliases() {
         return server.getCommandAliases();
     }
 
+    /**
+     * @see Server#getSpawnRadius()
+     */
     public static int getSpawnRadius() {
         return server.getSpawnRadius();
     }
 
+    /**
+     * @see Server#setSpawnRadius(int value)
+     */
     public static void setSpawnRadius(int value) {
         server.setSpawnRadius(value);
     }
 
+    /**
+     * @see Server#getOnlineMode()
+     */
     public static boolean getOnlineMode() {
         return server.getOnlineMode();
     }
 
+    /**
+     * @see Server#getAllowFlight()
+     */
     public static boolean getAllowFlight() {
         return server.getAllowFlight();
     }
 
+    /**
+     * @see Server#isHardcore()
+     */
     public static boolean isHardcore() {
         return server.isHardcore();
     }
 
+    /**
+     * @see Server#shutdown()
+     */
     public static void shutdown() {
         server.shutdown();
     }
 
+    /**
+     * @see Server#broadcast(String message, String permission)
+     */
     public static int broadcast(String message, String permission) {
         return server.broadcast(message, permission);
     }
 
+    /**
+     * @see Server#getOfflinePlayer(String name)
+     */
     public static OfflinePlayer getOfflinePlayer(String name) {
         return server.getOfflinePlayer(name);
     }
 
+    /**
+     * @see Server#getPlayerExact(String name)
+     */
     public static Player getPlayerExact(String name) {
         return server.getPlayerExact(name);
     }
 
+    /**
+     * @see Server#getIPBans()
+     */
     public static Set<String> getIPBans() {
         return server.getIPBans();
     }
 
+    /**
+     * @see Server#banIP(String address)
+     */
     public static void banIP(String address) {
         server.banIP(address);
     }
 
+    /**
+     * @see Server#unbanIP(String address)
+     */
     public static void unbanIP(String address) {
         server.unbanIP(address);
     }
 
+    /**
+     * @see Server#getBannedPlayers()
+     */
     public static Set<OfflinePlayer> getBannedPlayers() {
         return server.getBannedPlayers();
     }
 
+    /**
+     * @see Server#setWhitelist(boolean value)
+     */
     public static void setWhitelist(boolean value) {
         server.setWhitelist(value);
     }
 
+    /**
+     * @see Server#getWhitelistedPlayers()
+     */
     public static Set<OfflinePlayer> getWhitelistedPlayers() {
         return server.getWhitelistedPlayers();
     }
 
+    /**
+     * @see Server#reloadWhitelist()
+     */
     public static void reloadWhitelist() {
         server.reloadWhitelist();
     }
 
+    /**
+     * @see Server#getConsoleSender()
+     */
     public static ConsoleCommandSender getConsoleSender() {
         return server.getConsoleSender();
     }
 
+    /**
+     * @see Server#getOperators()
+     */
     public static Set<OfflinePlayer> getOperators() {
         return server.getOperators();
     }
 
+    /**
+     * @see Server#getWorldContainer()
+     */
     public static File getWorldContainer() {
         return server.getWorldContainer();
     }
 
+    /**
+     * @see Server#getMessenger()
+     */
     public static Messenger getMessenger() {
         return server.getMessenger();
     }
 
+    /**
+     * @see Server#getAllowEnd()
+     */
     public static boolean getAllowEnd() {
         return server.getAllowEnd();
     }
 
+    /**
+     * @see Server#getUpdateFolderFile()
+     */
     public static File getUpdateFolderFile() {
         return server.getUpdateFolderFile();
     }
 
+    /**
+     * @see Server#getConnectionThrottle()
+     */
     public static long getConnectionThrottle() {
         return server.getConnectionThrottle();
     }
 
+    /**
+     * @see Server#getTicksPerAnimalSpawns()
+     */
     public static int getTicksPerAnimalSpawns() {
         return server.getTicksPerAnimalSpawns();
     }
 
+    /**
+     * @see Server#getTicksPerMonsterSpawns()
+     */
     public static int getTicksPerMonsterSpawns() {
         return server.getTicksPerMonsterSpawns();
     }
 
+    /**
+     * @see Server#useExactLoginLocation()
+     */
     public static boolean useExactLoginLocation() {
         return server.useExactLoginLocation();
     }
 
+    /**
+     * @see Server#getDefaultGameMode()
+     */
     public static GameMode getDefaultGameMode() {
         return server.getDefaultGameMode();
     }
 
+    /**
+     * @see Server#setDefaultGameMode(GameMode mode)
+     */
     public static void setDefaultGameMode(GameMode mode) {
         server.setDefaultGameMode(mode);
     }
 
+    /**
+     * @see Server#getOfflinePlayers()
+     */
     public static OfflinePlayer[] getOfflinePlayers() {
         return server.getOfflinePlayers();
     }
 
+    /**
+     * @see Server#createInventory(InventoryHolder owner, InventoryType type)
+     */
     public static Inventory createInventory(InventoryHolder owner, InventoryType type) {
         return server.createInventory(owner, type);
     }
 
+    /**
+     * @see Server#createInventory(InventoryHolder owner, int size)
+     */
     public static Inventory createInventory(InventoryHolder owner, int size) {
         return server.createInventory(owner, size);
     }
 
+    /**
+     * @see Server#createInventory(InventoryHolder owner, int size, String title)
+     */
     public static Inventory createInventory(InventoryHolder owner, int size, String title) {
         return server.createInventory(owner, size, title);
     }
 
+    /**
+     * @see Server#getHelpMap()
+     */
     public static HelpMap getHelpMap() {
         return server.getHelpMap();
     }
 
+    /**
+     * @see Server#getMonsterSpawnLimit()
+     */
     public static int getMonsterSpawnLimit() {
         return server.getMonsterSpawnLimit();
     }
 
+    /**
+     * @see Server#getAnimalSpawnLimit()
+     */
     public static int getAnimalSpawnLimit() {
         return server.getAnimalSpawnLimit();
     }
 
+    /**
+     * @see Server#getWaterAnimalSpawnLimit()
+     */
     public static int getWaterAnimalSpawnLimit() {
         return server.getWaterAnimalSpawnLimit();
     }
 
+    /**
+     * @see Server#getAmbientSpawnLimit()
+     */
     public static int getAmbientSpawnLimit() {
         return server.getAmbientSpawnLimit();
     }
 
+    /**
+     * @see Server#isPrimaryThread()
+     */
     public static boolean isPrimaryThread() {
         return server.isPrimaryThread();
     }
 
+    /**
+     * @see Server#getMotd()
+     */
     public static String getMotd() {
         return server.getMotd();
     }
 
+    /**
+     * @see Server#getShutdownMessage()
+     */
     public static String getShutdownMessage() {
         return server.getShutdownMessage();
     }
 
+    /**
+     * @see Server#getWarningState()
+     */
     public static WarningState getWarningState() {
         return server.getWarningState();
     }
 
+    /**
+     * @see Server#getItemFactory()
+     */
     public static ItemFactory getItemFactory() {
         return server.getItemFactory();
     }
 
+    /**
+     * @see Server#getScoreboardManager()
+     */
     public static ScoreboardManager getScoreboardManager() {
         return server.getScoreboardManager();
     }
diff --git a/src/main/java/org/bukkit/command/Command.java b/src/main/java/org/bukkit/command/Command.java
index 30a0060b..5416c71d 100644
--- a/src/main/java/org/bukkit/command/Command.java
+++ b/src/main/java/org/bukkit/command/Command.java
@@ -11,6 +11,7 @@ import org.bukkit.ChatColor;
 import org.bukkit.Server;
 import org.bukkit.entity.Player;
 import org.bukkit.permissions.Permissible;
+import org.bukkit.plugin.PluginDescriptionFile;
 import org.bukkit.util.StringUtil;
 
 import com.google.common.collect.ImmutableList;
@@ -279,10 +280,13 @@ public abstract class Command {
     }
 
     /**
-     * Sets the list of aliases to request on registration for this command
+     * Sets the list of aliases to request on registration for this command.
+     * This is not effective outside of defining aliases in the {@link
+     * PluginDescriptionFile#getCommands()} (under the
+     * `<code>aliases</code>' node) is equivalent to this method.
      *
-     * @param aliases Aliases to register to this command
-     * @return This command object, for linking
+     * @param aliases aliases to register to this command
+     * @return this command object, for chaining
      */
     public Command setAliases(List<String> aliases) {
         this.aliases = aliases;
@@ -293,10 +297,12 @@ public abstract class Command {
     }
 
     /**
-     * Sets a brief description of this command
+     * Sets a brief description of this command. Defining a description in the
+     * {@link PluginDescriptionFile#getCommands()} (under the
+     * `<code>description</code>' node) is equivalent to this method.
      *
-     * @param description New command description
-     * @return This command object, for linking
+     * @param description new command description
+     * @return this command object, for chaining
      */
     public Command setDescription(String description) {
         this.description = description;
@@ -306,8 +312,9 @@ public abstract class Command {
     /**
      * Sets the message sent when a permission check fails
      *
-     * @param permissionMessage New permission message, null to indicate default message, or an empty string to indicate no message
-     * @return This command object, for linking
+     * @param permissionMessage new permission message, null to indicate
+     *     default message, or an empty string to indicate no message
+     * @return this command object, for chaining
      */
     public Command setPermissionMessage(String permissionMessage) {
         this.permissionMessage = permissionMessage;
@@ -317,8 +324,8 @@ public abstract class Command {
     /**
      * Sets the example usage of this command
      *
-     * @param usage New example usage
-     * @return This command object, for linking
+     * @param usage new example usage
+     * @return this command object, for chaining
      */
     public Command setUsage(String usage) {
         this.usageMessage = usage;
diff --git a/src/main/java/org/bukkit/entity/Player.java b/src/main/java/org/bukkit/entity/Player.java
index dec22141..de42f2e8 100644
--- a/src/main/java/org/bukkit/entity/Player.java
+++ b/src/main/java/org/bukkit/entity/Player.java
@@ -560,7 +560,7 @@ public interface Player extends HumanEntity, Conversable, CommandSender, Offline
      * not be reliable, as it is a state provided by the client, and may therefore not be accurate.
      *
      * @return True if the player standing on a solid block, else false.
-     * @deprecated Inconsistent with {@link org.bukkit.craftbukkit.entity.Entity#isOnGround()}
+     * @deprecated Inconsistent with {@link org.bukkit.entity.Entity#isOnGround()}
      */
     @Deprecated
     public boolean isOnGround();
diff --git a/src/main/java/org/bukkit/entity/ThrownPotion.java b/src/main/java/org/bukkit/entity/ThrownPotion.java
index 4da1f1b9..8b382db3 100644
--- a/src/main/java/org/bukkit/entity/ThrownPotion.java
+++ b/src/main/java/org/bukkit/entity/ThrownPotion.java
@@ -9,8 +9,10 @@ import org.bukkit.potion.PotionEffect;
  * Represents a thrown potion bottle
  */
 public interface ThrownPotion extends Projectile {
+
     /**
      * Returns the effects that are applied by this potion.
+     *
      * @return The potion effects
      */
     public Collection<PotionEffect> getEffects();
@@ -18,9 +20,9 @@ public interface ThrownPotion extends Projectile {
     /**
      * Returns a copy of the ItemStack for this thrown potion.
      * <p>
-     * Altering this copy will not alter the thrown potion directly.
-     * If you want to alter the thrown potion, you must use the
-     * {@link #setItemStack(ItemStack) setItemStack} method.
+     * Altering this copy will not alter the thrown potion directly. If you
+     * want to alter the thrown potion, you must use the {@link
+     * #setItem(ItemStack) setItemStack} method.
      *
      * @return A copy of the ItemStack for this thrown potion.
      */
diff --git a/src/main/java/org/bukkit/event/Event.java b/src/main/java/org/bukkit/event/Event.java
index d754d714..fa29c27e 100644
--- a/src/main/java/org/bukkit/event/Event.java
+++ b/src/main/java/org/bukkit/event/Event.java
@@ -1,31 +1,42 @@
 package org.bukkit.event;
 
+import org.bukkit.plugin.PluginManager;
+
 /**
- * Represents an event
+ * Represents an event.
+ *
+ * @see PluginManager#callEvent(Event)
+ * @see PluginManager#registerEvents(Listener,Plugin)
  */
 public abstract class Event {
     private String name;
     private final boolean async;
 
     /**
-     * The default constructor is defined for cleaner code.
-     * This constructor assumes the event is synchronous.
+     * The default constructor is defined for cleaner code. This constructor
+     * assumes the event is synchronous.
      */
     public Event() {
         this(false);
     }
 
     /**
-     * This constructor is used to explicitly declare an event as synchronous or asynchronous.
+     * This constructor is used to explicitly declare an event as synchronous
+     * or asynchronous.
      *
-     * @param isAsync true indicates the event will fire asynchronously. false by default
+     * @param isAsync true indicates the event will fire asynchronously, false
+     *     by default from default constructor
      */
     public Event(boolean isAsync) {
         this.async = isAsync;
     }
 
     /**
-     * @return Name of this event
+     * Convenience method for providing a user-friendly identifier. By
+     * default, it is the event's class's {@linkplain Class#getSimpleName()
+     * simple name}.
+     *
+     * @return name of this event
      */
     public String getEventName() {
         if (name == null) {
@@ -37,17 +48,24 @@ public abstract class Event {
     public abstract HandlerList getHandlers();
 
     /**
-     * Any custom event that should not by synchronized with other events must use the specific constructor.
-     * These are the caveats of using an asynchronous event:
-     * <li>The event is never fired from inside code triggered by a synchronous event.
-     *          Attempting to do so results in an {@link java.lang.IllegalStateException}.</li>
-     * <li>However, asynchronous event handlers may fire synchronous or asynchronous events</li>
-     * <li>The event may be fired multiple times simultaneously and in any order.</li>
-     * <li>Any newly registered or unregistered handler is ignored after an event starts execution.</li>
-     * <li>The handlers for this event may block for any length of time.</li>
-     * <li>Some implementations may selectively declare a specific event use as asynchronous.
-     *          This behavior should be clearly defined.</li>
-     * <li>Asynchronous calls are not calculated in the plugin timing system.</li>
+     * Any custom event that should not by synchronized with other events must
+     * use the specific constructor. These are the caveats of using an
+     * asynchronous event:
+     * <ul>
+     * <li>The event is never fired from inside code triggered by a
+     *     synchronous event. Attempting to do so results in an {@link
+     *     java.lang.IllegalStateException}.
+     * <li>However, asynchronous event handlers may fire synchronous or
+     *     asynchronous events
+     * <li>The event may be fired multiple times simultaneously and in any
+     *     order.
+     * <li>Any newly registered or unregistered handler is ignored after an
+     *     event starts execution.
+     * <li>The handlers for this event may block for any length of time.
+     * <li>Some implementations may selectively declare a specific event use
+     *     as asynchronous. This behavior should be clearly defined.
+     * <li>Asynchronous calls are not calculated in the plugin timing system.
+     * </ul>
      *
      * @return false by default, true if the event fires asynchronously
      */
@@ -58,20 +76,20 @@ public abstract class Event {
     public enum Result {
 
         /**
-         * Deny the event.
-         * Depending on the event, the action indicated by the event will either not take place or will be reverted.
-         * Some actions may not be denied.
+         * Deny the event. Depending on the event, the action indicated by the
+         * event will either not take place or will be reverted. Some actions
+         * may not be denied.
          */
         DENY,
         /**
-         * Neither deny nor allow the event.
-         * The server will proceed with its normal handling.
+         * Neither deny nor allow the event. The server will proceed with its
+         * normal handling.
          */
         DEFAULT,
         /**
-         * Allow / Force the event.
-         * The action indicated by the event will take place if possible, even if the server would not normally allow the action.
-         * Some actions may not be allowed.
+         * Allow / Force the event. The action indicated by the event will
+         * take place if possible, even if the server would not normally allow
+         * the action. Some actions may not be allowed.
          */
         ALLOW;
     }
diff --git a/src/main/java/org/bukkit/plugin/Plugin.java b/src/main/java/org/bukkit/plugin/Plugin.java
index 40cda891..5a91ecb3 100644
--- a/src/main/java/org/bukkit/plugin/Plugin.java
+++ b/src/main/java/org/bukkit/plugin/Plugin.java
@@ -130,9 +130,20 @@ public interface Plugin extends TabExecutor {
     public void setNaggable(boolean canNag);
 
     /**
-     * Gets the {@link EbeanServer} tied to this plugin
+     * Gets the {@link EbeanServer} tied to this plugin. This will only be
+     * available if enabled in the {@link
+     * PluginDescriptionFile#isDatabaseEnabled()}
+     * <p>
+     * <i>For more information on the use of <a href="http://www.avaje.org/">
+     * Avaje Ebeans ORM</a>, see <a
+     * href="http://www.avaje.org/ebean/documentation.html">Avaje Ebeans
+     * Documentation</a></i>
+     * <p>
+     * <i>For an example using Ebeans ORM, see <a
+     * href="https://github.com/Bukkit/HomeBukkit">Bukkit's Homebukkit Plugin
+     * </a></i>
      *
-     * @return Ebean server instance
+     * @return ebean server instance or null if not enabled
      */
     public EbeanServer getDatabase();
 
diff --git a/src/main/java/org/bukkit/plugin/PluginDescriptionFile.java b/src/main/java/org/bukkit/plugin/PluginDescriptionFile.java
index 3a5f4e00..d2a59e40 100644
--- a/src/main/java/org/bukkit/plugin/PluginDescriptionFile.java
+++ b/src/main/java/org/bukkit/plugin/PluginDescriptionFile.java
@@ -7,6 +7,11 @@ import java.util.HashMap;
 import java.util.List;
 import java.util.Map;
 
+import org.bukkit.command.CommandExecutor;
+import org.bukkit.command.PluginCommand;
+import org.bukkit.plugin.Plugin;
+import org.bukkit.plugin.java.JavaPlugin;
+import org.bukkit.permissions.Permissible;
 import org.bukkit.permissions.Permission;
 import org.bukkit.permissions.PermissionDefault;
 import org.yaml.snakeyaml.Yaml;
@@ -16,7 +21,148 @@ import com.google.common.collect.ImmutableList;
 import com.google.common.collect.ImmutableMap;
 
 /**
- * Provides access to a Plugins description file, plugin.yaml
+ * This type is the runtime-container for the information in the plugin.yml.
+ * All plugins must have a respective plugin.yml. For plugins written in java
+ * using the standard plugin loader, this file must be in the root of the jar
+ * file.
+ * <p>
+ * When Bukkit loads a plugin, it needs to know some basic information about
+ * it. It reads this information from a YAML file, 'plugin.yml'. This file
+ * consists of a set of attributes, each defined on a new line and with no
+ * indentation.
+ * <p>
+ * Every (almost* every) method corresponds with a specific entry in the
+ * plugin.yml. These are the <b>required</b> entries for every plugin.yml:
+ * <ul>
+ * <li>{@link #getName()} - <code>name</code>
+ * <li>{@link #getVersion()} - <code>version</code>
+ * <li>{@link #getMain()} - <code>main</code>
+ * </ul>
+ * <p>
+ * Failing to include any of these items will throw an exception and cause the
+ * server to ignore your plugin.
+ * <p>
+ * This is a list of the possible yaml keys, with specific details included in
+ * the respective method documentations:
+ * <table border=1>
+ * <tr>
+ *     <th>Node</th>
+ *     <th>Method</th>
+ *     <th>Summary</th>
+ * </tr><tr>
+ *     <td><code>name</code></td>
+ *     <td>{@link #getName()}</td>
+ *     <td>The unique name of plugin</td>
+ * </tr><tr>
+ *     <td><code>version</code></td>
+ *     <td>{@link #getVersion()}</td>
+ *     <td>A plugin revision identifier</td>
+ * </tr><tr>
+ *     <td><code>main</code></td>
+ *     <td>{@link #getMain()}</td>
+ *     <td>The plugin's initial class file</td>
+ * </tr><tr>
+ *     <td><code>author</code><br><code>authors</code></td>
+ *     <td>{@link #getAuthors()}</td>
+ *     <td>The plugin contributors</td>
+ * </tr><tr>
+ *     <td><code>description</code></td>
+ *     <td>{@link #getDescription()}</td>
+ *     <td>Human readable plugin summary</td>
+ * </tr><tr>
+ *     <td><code>website</code></td>
+ *     <td>{@link #getWebsite()}</td>
+ *     <td>The URL to the plugin's site</td>
+ * </tr><tr>
+ *     <td><code>prefix</code></td>
+ *     <td>{@link #getPrefix()}</td>
+ *     <td>The token to prefix plugin log entries</td>
+ * </tr><tr>
+ *     <td><code>database</code></td>
+ *     <td>{@link #isDatabaseEnabled()}</td>
+ *     <td>Indicator to enable database support</td>
+ * </tr><tr>
+ *     <td><code>load</code></td>
+ *     <td>{@link #getLoad()}</td>
+ *     <td>The phase of server-startup this plugin will load during</td>
+ * </tr><tr>
+ *     <td><code>depend</code></td>
+ *     <td>{@link #getDepend()}</td>
+ *     <td>Other required plugins</td>
+ * </tr><tr>
+ *     <td><code>softdepend</code></td>
+ *     <td>{@link #getSoftDepend()}</td>
+ *     <td>Other plugins that add functionality</td>
+ * </tr><tr>
+ *     <td><code>loadbefore</code></td>
+ *     <td>{@link #getLoadBefore()}</td>
+ *     <td>The inverse softdepend</td>
+ * </tr><tr>
+ *     <td><code>commands</code></td>
+ *     <td>{@link #getCommands()}</td>
+ *     <td>The commands the plugin will register</td>
+ * </tr><tr>
+ *     <td><code>permissions</code></td>
+ *     <td>{@link #getPermissions()}</td>
+ *     <td>The permissions the plugin will register</td>
+ * </tr><tr>
+ *     <td><code>default-permission</code></td>
+ *     <td>{@link #getPermissionDefault()}</td>
+ *     <td>The default {@link Permission#getDefault() default} permission
+ *         state for defined {@link #getPermissions() permissions} the plugin
+ *         will register</td>
+ * </tr>
+ * </table>
+ * <p>
+ * A plugin.yml example:<blockquote><pre>
+ *name: Inferno
+ *version: 1.4.1
+ *description: This plugin is so 31337. You can set yourself on fire.
+ *# We could place every author in the authors list, but chose not to for illustrative purposes
+ *# Also, having an author distinguishes that person as the project lead, and ensures their
+ *# name is displayed first
+ *author: CaptainInflamo
+ *authors: [Cogito, verrier, EvilSeph]
+ *website: http://www.curse.com/server-mods/minecraft/myplugin
+ *
+ *main: com.captaininflamo.bukkit.inferno.Inferno
+ *database: false
+ *depend: [NewFire, FlameWire]
+ *
+ *commands:
+ *  flagrate:
+ *    description: Set yourself on fire.
+ *    aliases: [combust_me, combustMe]
+ *    permission: inferno.flagrate
+ *    usage: Syntax error! Simply type /&lt;command&gt; to ignite yourself.
+ *  burningdeaths:
+ *    description: List how many times you have died by fire.
+ *    aliases: [burning_deaths, burningDeaths]
+ *    permission: inferno.burningdeaths
+ *    usage: |
+ *      /&lt;command&gt; [player]
+ *      Example: /&lt;command&gt; - see how many times you have burned to death
+ *      Example: /&lt;command&gt; CaptainIce - see how many times CaptainIce has burned to death
+ *
+ *permissions:
+ *  inferno.*:
+ *    description: Gives access to all Inferno commands
+ *    children:
+ *      inferno.flagrate: true
+ *      inferno.burningdeaths: true
+ *      inferno.burningdeaths.others: true
+ *  inferno.flagrate:
+ *    description: Allows you to ignite yourself
+ *    default: true
+ *  inferno.burningdeaths:
+ *    description: Allows you to see how many times you have burned to death
+ *    default: true
+ *  inferno.burningdeaths.others:
+ *    description: Allows you to see how many times others have burned to death
+ *    default: op
+ *    children:
+ *      inferno.burningdeaths: true
+ *</pre></blockquote>
  */
 public final class PluginDescriptionFile {
     private static final Yaml yaml = new Yaml(new SafeConstructor());
@@ -46,7 +192,8 @@ public final class PluginDescriptionFile {
      * Loads a PluginDescriptionFile from the specified reader
      *
      * @param reader The reader
-     * @throws InvalidDescriptionException If the PluginDescriptionFile is invalid
+     * @throws InvalidDescriptionException If the PluginDescriptionFile is
+     *     invalid
      */
     public PluginDescriptionFile(final Reader reader) throws InvalidDescriptionException {
         loadMap(asMap(yaml.load(reader)));
@@ -66,99 +213,522 @@ public final class PluginDescriptionFile {
     }
 
     /**
-     * Saves this PluginDescriptionFile to the given writer
+     * Gives the name of the plugin. This name is a unique identifier for
+     * plugins.
+     * <ul>
+     * <li>Must consist of all alphanumeric characters, underscores, hyphon,
+     *     and period (a-z,A-Z,0-9, _.-). Any other character will cause the
+     *     plugin.yml to fail loading.
+     * <li>Used to determine the name of the plugin's data folder. Data
+     *     folders are placed in the ./plugins/ directory by default, but this
+     *     behavior should not be relied on. {@link Plugin#getDataFolder()}
+     *     should be used to reference the data folder.
+     * <li>It is good practice to name your jar the same as this, for example
+     *     'MyPlugin.jar'.
+     * <li>Case sensitive.
+     * <li>The is the token referenced in {@link #getDepend()}, {@link
+     *     #getSoftDepend()}, and {@link #getLoadBefore()}.
+     * </ul>
+     * <p>
+     * In the plugin.yml, this entry is named <code>name</code>.
+     * <p>
+     * Example:<blockquote><pre>name: MyPlugin</pre></blockquote>
      *
-     * @param writer Writer to output this file to
+     * @return the name of the plugin
      */
-    public void save(Writer writer) {
-        yaml.dump(saveMap(), writer);
+    public String getName() {
+        return name;
     }
 
     /**
-     * Returns the name of a plugin
+     * Gives the version of the plugin.
+     * <ul>
+     * <li>Version is an arbitrary string, however the most common format is
+     *     MajorRelease.MinorRelease.Build (eg: 1.4.1).
+     * <li>Typically you will increment this every time you release a new
+     *     feature or bug fix.
+     * <li>Displayed when a user types <code>/version PluginName</code>
+     * </ul>
+     * <p>
+     * In the plugin.yml, this entry is named <code>version</code>.
+     * <p>
+     * Example:<blockquote><pre>version: 1.4.1</pre></blockquote>
      *
-     * @return String name
+     * @return the version of the plugin
      */
-    public String getName() {
-        return name;
+    public String getVersion() {
+        return version;
     }
 
     /**
-     * Returns the version of a plugin
+     * Gives the fully qualified name of the main class for a plugin. The
+     * format should follow the {@link ClassLoader#loadClass(String)} syntax
+     * to successfully be resolved at runtime. For most plugins, this is the
+     * class that extends {@link JavaPlugin}.
+     * <ul>
+     * <li>This must contain the full namespace including the class file
+     *     itself.
+     * <li>If your namespace is <code>org.bukkit.plugin</code>, and your class
+     *     file is called <code>MyPlugin</code> then this must be
+     *     <code>org.bukkit.plugin.MyPlugin</code>
+     * <li>No plugin can use <code>org.bukkit.</code> as a base package for
+     *     <b>any class</b>, including the main class.
+     * </ul>
+     * <p>
+     * In the plugin.yml, this entry is named <code>main</code>.
+     * <p>
+     * Example:
+     * <blockquote><pre>main: org.bukkit.plugin.MyPlugin</pre></blockquote>
      *
-     * @return String name
+     * @return the fully qualified main class for the plugin
      */
-    public String getVersion() {
-        return version;
+    public String getMain() {
+        return main;
     }
 
     /**
-     * Returns the name of a plugin including the version
+     * Gives a human-friendly description of the functionality the plugin
+     * provides.
+     * <ul>
+     * <li>The description can have multiple lines.
+     * <li>Displayed when a user types <code>/version PluginName</code>
+     * </ul>
+     * <p>
+     * In the plugin.yml, this entry is named <code>description</code>.
+     * <p>
+     * Example:
+     * <blockquote><pre>description: This plugin is so 31337. You can set yourself on fire.</pre></blockquote>
      *
-     * @return String name
+     * @return description of this plugin, or null if not specified
      */
-    public String getFullName() {
-        return name + " v" + version;
+    public String getDescription() {
+        return description;
     }
 
     /**
-     * Returns the main class for a plugin
+     * Gives the phase of server startup that the plugin should be loaded.
+     * <ul>
+     * <li>Possible values are in {@link PluginLoadOrder}.
+     * <li>Defaults to {@link PluginLoadOrder#POSTWORLD}.
+     * <li>Certain caveats apply to each phase.
+     * <li>When different, {@link #getDepend()}, {@link #getSoftDepend()}, and
+     *     {@link #getLoadBefore()} become relative in order loaded per-phase.
+     *     If a plugin loads at <code>STARTUP</code>, but a dependency loads
+     *     at <code>POSTWORLD</code>, the dependency will not be loaded before
+     *     the plugin is loaded.
+     * </ul>
+     * <p>
+     * In the plugin.yml, this entry is named <code>load</code>.
+     * <p>
+     * Example:<blockquote><pre>load: STARTUP</pre></blockquote>
      *
-     * @return Java classpath
+     * @return the phase when the plugin should be loaded
      */
-    public String getMain() {
-        return main;
+    public PluginLoadOrder getLoad() {
+        return order;
     }
 
-    public Map<String, Map<String, Object>> getCommands() {
-        return commands;
+    /**
+     * Gives the list of authors for the plugin.
+     * <ul>
+     * <li>Gives credit to the developer.
+     * <li>Used in some server error messages to provide helpful feedback on
+     *     who to contact when an error occurs.
+     * <li>A bukkit.org forum handle or email address is recommended.
+     * <li>Is displayed when a user types <code>/version PluginName</code>
+     * <li><code>authors</code> must be in <a
+     *     href="http://en.wikipedia.org/wiki/YAML#Lists">YAML list
+     *     format</a>.
+     * </ul>
+     * <p>
+     * In the plugin.yml, this has two entries, <code>author</code> and
+     * <code>authors</code>.
+     * <p>
+     * Single author example:
+     * <blockquote><pre>author: CaptainInflamo</pre></blockquote>
+     * Multiple author example:
+     * <blockquote><pre>authors: [Cogito, verrier, EvilSeph]</pre></blockquote>
+     * When both are specified, author will be the first entry in the list, so
+     * this example:
+     * <blockquote><pre>author: Grum
+     *authors:
+     *- feildmaster
+     *- amaranth</pre></blockquote>
+     * Is equivilant to this example:
+     * <blockquote><pre>authors: [Grum, feildmaster, aramanth]<pre></blockquote>
+     *
+     * @return an immutable list of the plugin's authors
+     */
+    public List<String> getAuthors() {
+        return authors;
     }
 
+    /**
+     * Gives the plugin's or plugin's author's website.
+     * <ul>
+     * <li>A link to the Curse page that includes documentation and downloads
+     *     is highly recommended.
+     * <li>Displayed when a user types <code>/version PluginName</code>
+     * </ul>
+     * <p>
+     * In the plugin.yml, this entry is named <code>website</code>.
+     * <p>
+     * Example:
+     * <blockquote><pre>website: http://www.curse.com/server-mods/minecraft/myplugin</pre></blockquote>
+     *
+     * @return description of this plugin, or null if not specified
+     */
+    public String getWebsite() {
+        return website;
+    }
+
+    /**
+     * Gives if the plugin uses a database.
+     * <ul>
+     * <li>Using a database is non-trivial.
+     * <li>Valid values include <code>true</code> and <code>false</code>
+     * </ul>
+     * <p>
+     * In the plugin.yml, this entry is named <code>database</code>.
+     * <p>
+     * Example:
+     * <blockquote><pre>database: false</pre></blockquote>
+     *
+     * @return if this plugin requires a database
+     * @see Plugin#getDatabase()
+     */
+    public boolean isDatabaseEnabled() {
+        return database;
+    }
+
+    /**
+     * Gives a list of other plugins that the plugin requires.
+     * <ul>
+     * <li>Use the value in the {@link #getName()} of the target plugin to
+     *     specify the dependency.
+     * <li>If any plugin listed here is not found, your plugin will fail to
+     *     load at startup.
+     * <li>If multiple plugins list each other in <code>depend</code>,
+     *     creating a network with no individual plugin does not list another
+     *     plugin in the <a
+     *     href=https://en.wikipedia.org/wiki/Circular_dependency>network</a>,
+     *     all plugins in that network will fail.
+     * <li><code>depend</code> must be in must be in <a
+     *     href="http://en.wikipedia.org/wiki/YAML#Lists">YAML list
+     *     format</a>.
+     * </ul>
+     * <p>
+     * In the plugin.yml, this entry is named <code>depend</code>.
+     * <p>
+     * Example:
+     * <blockquote><pre>depend:
+     *- OnePlugin
+     *- AnotherPlugin</pre></blockquote>
+     *
+     * @return immutable list of the plugin's dependencies
+     */
     public List<String> getDepend() {
         return depend;
     }
 
+    /**
+     * Gives a list of other plugins that the plugin requires for full
+     * functionality. The {@link PluginManager} will make best effort to treat
+     * all entries here as if they were a {@link #getDepend() dependency}, but
+     * will never fail because of one of these entries.
+     * <ul>
+     * <li>Use the value in the {@link #getName()} of the target plugin to
+     *     specify the dependency.
+     * <li>When an unresolvable plugin is listed, it will be ignored and does
+     *     not affect load order.
+     * <li>When a circular dependency occurs (a network of plugins depending
+     *     or soft-dependending each other), it will arbitrarily choose a
+     *     plugin that can be resolved when ignoring soft-dependencies.
+     * <li><code>softdepend</code> must be in <a
+     *     href="http://en.wikipedia.org/wiki/YAML#Lists">YAML list
+     *     format</a>.
+     * </ul>
+     * <p>
+     * In the plugin.yml, this entry is named <code>softdepend</code>.
+     * <p>
+     * Example:
+     * <blockquote><pre>softdepend: [OnePlugin, AnotherPlugin]</pre></blockquote>
+     *
+     * @return immutable list of the plugin's preferred dependencies
+     */
     public List<String> getSoftDepend() {
         return softDepend;
     }
 
     /**
-     * Gets the list of plugins that should consider this plugin a soft-dependency
-     * @return immutable list of plugins that should consider this plugin a soft-dependency
+     * Gets the list of plugins that should consider this plugin a
+     * soft-dependency.
+     * <ul>
+     * <li>Use the value in the {@link #getName()} of the target plugin to
+     *     specify the dependency.
+     * <li>The plugin should load before any other plugins listed here.
+     * <li>Specifying another plugin here is strictly equivalent to having the
+     *     specified plugin's {@link #getSoftDepend()} include {@link
+     *     #getName() this plugin}.
+     * <li><code>loadbefore</code> must be in <a
+     *     href="http://en.wikipedia.org/wiki/YAML#Lists">YAML list
+     *     format</a>.
+     * </ul>
+     * <p>
+     * In the plugin.yml, this entry is named <code>loadbefore</code>.
+     * <p>
+     * Example:
+     * <blockquote><pre>loadbefore:
+     *- OnePlugin
+     *- AnotherPlugin</pre></blockquote>
+     *
+     * @return immutable list of plugins that should consider this plugin a
+     *     soft-dependency
      */
     public List<String> getLoadBefore() {
         return loadBefore;
     }
 
-    public PluginLoadOrder getLoad() {
-        return order;
-    }
-
     /**
-     * Gets the description of this plugin
+     * Gives the token to prefix plugin-specific logging messages with.
+     * <ul>
+     * <li>This includes all messages using {@link Plugin#getLogger()}.
+     * <li>If not specified, the server uses the plugin's {@link #getName()
+     *     name}.
+     * <li>This should clearly indicate what plugin is being logged.
+     * </ul>
+     * <p>
+     * In the plugin.yml, this entry is named <code>prefix</code>.
+     * <p>
+     * Example:<blockquote><pre>prefix: ex-why-zee</pre></blockquote>
      *
-     * @return Description of this plugin
+     * @return the prefixed logging token, or null if not specified
      */
-    public String getDescription() {
-        return description;
-    }
-
-    public List<String> getAuthors() {
-        return authors;
-    }
-
-    public String getWebsite() {
-        return website;
-    }
-
-    public boolean isDatabaseEnabled() {
-        return database;
+    public String getPrefix() {
+        return prefix;
     }
 
-    public void setDatabaseEnabled(boolean database) {
-        this.database = database;
+    /**
+     * Gives the map of command-name to command-properties. Each entry in this
+     * map corresponds to a single command and the respective values are the
+     * properties of the command. Each property, <i>with the exception of
+     * aliases</i>, can be defined at runtime using methods in {@link
+     * PluginCommand} and are defined here only as a convenience.
+     * <table border=1>
+     * <tr>
+     *     <th>Node</th>
+     *     <th>Method</th>
+     *     <th>Type</th>
+     *     <th>Description</th>
+     *     <th>Example</th>
+     * </tr><tr>
+     *     <td><code>description</code></td>
+     *     <td>{@link PluginCommand#setDescription(String)}</td>
+     *     <td>String</td>
+     *     <td>A user-friendly description for a command. It is useful for
+     *         documentation purposes as well as in-game help.</td>
+     *     <td><blockquote><pre>description: Set yourself on fire</pre></blockquote></td>
+     * </tr><tr>
+     *     <td><code>aliases</code></td>
+     *     <td>{@link PluginCommand#setAliases(List)}</td>
+     *     <td>String or <a
+     *         href="http://en.wikipedia.org/wiki/YAML#Lists">List</a> of
+     *         strings</td>
+     *     <td>Alternative command names, with special usefulness for commands
+     *         that are already registered. <i>Aliases are not effective when
+     *         defined at runtime,</i> so the plugin description file is the
+     *         only way to have them properly defined.</td>
+     *     <td>Single alias format:
+     *         <blockquote><pre>aliases: combust_me</pre></blockquote> or
+     *         multiple alias format:
+     *         <blockquote><pre>aliases: [combust_me, combustMe]</pre></blockquote></td>
+     * </tr><tr>
+     *     <td><code>permission</code></td>
+     *     <td>{@link PluginCommand#setPermission(String)}</td>
+     *     <td>String</td>
+     *     <td>The name of the {@link Permission} required to use the command.
+     *         A user without the permission will receive the specified
+     *         message (see {@linkplain
+     *         PluginCommand#setPermissionMessage(String) below}), or a
+     *         standard one if no specific message is defined. Without the
+     *         permission node, no {@link
+     *         PluginCommand#setExecutor(CommandExecutor) CommandExecutor} or
+     *         {@link PluginCommand#setTabCompleter(TabCompleter)
+     *         TabCompleter} will be called.</td>
+     *     <td><blockquote><pre>permission: inferno.flagrate</pre></blockquote></td>
+     * </tr><tr>
+     *     <td><code>permission-message</code></td>
+     *     <td>{@link PluginCommand#setPermissionMessage(String)}</td>
+     *     <td>String</td>
+     *     <td><ul>
+     *         <li>Displayed to a player that attempts to use a command, but
+     *             does not have the required permission. See {@link
+     *             PluginCommand#getPermission() above}.
+     *         <li>&lt;permission&gt; is a macro that is replaced with the
+     *             permission node required to use the command.
+     *         <li>Using empty quotes is a valid way to indicate nothing
+     *             should be displayed to a player.
+     *         </ul></td>
+     *     <td><blockquote><pre>permission-message: You do not have /&lt;permission&gt;</pre></blockquote></td>
+     * </tr><tr>
+     *     <td><code>usage</code></td>
+     *     <td>{@link PluginCommand#setUsage(String)}</td>
+     *     <td>String</td>
+     *     <td>This message is displayed to a player when the {@link
+     *         PluginCommand#setExecutor(CommandExecutor)} {@linkplain
+     *         CommandExecutor#onCommand(CommandSender,Command,String,String[])
+     *         returns false}. &lt;command&gt; is a macro that is replaced
+     *         the command issued.</td>
+     *     <td><blockquote><pre>usage: Syntax error! Perhaps you meant /&lt;command&gt; PlayerName?</pre></blockquote>
+     *         It is worth noting that to use a colon in a yaml, like
+     *         <code>`usage: Usage: /god [player]'</code>, you need to
+     *         <a href="http://yaml.org/spec/current.html#id2503232">surround
+     *         the message with double-quote</a>:
+     *         <blockquote><pre>usage: "Usage: /god [player]"</pre></blockquote></td>
+     * </tr>
+     * </table>
+     * The commands are structured as a hiearchy of <a
+     * href="http://yaml.org/spec/current.html#id2502325">nested mappings</a>.
+     * The primary (top-level, no intendentation) node is
+     * `<code>commands</code>', while each individual command name is
+     * indented, indicating it maps to some value (in our case, the
+     * properties of the table above).
+     * <p>
+     * Here is an example bringing together the piecemeal examples above, as
+     * well as few more definitions:<blockquote><pre>
+     *commands:
+     *  flagrate:
+     *    description: Set yourself on fire.
+     *    aliases: [combust_me, combustMe]
+     *    permission: inferno.flagrate
+     *    permission-message: You do not have /&lt;permission&gt;
+     *    usage: Syntax error! Perhaps you meant /&lt;command&gt; PlayerName?
+     *  burningdeaths:
+     *    description: List how many times you have died by fire.
+     *    aliases:
+     *    - burning_deaths
+     *    - burningDeaths
+     *    permission: inferno.burningdeaths
+     *    usage: |
+     *      /&lt;command&gt; [player]
+     *      Example: /&lt;command&gt; - see how many times you have burned to death
+     *      Example: /&lt;command&gt; CaptainIce - see how many times CaptainIce has burned to death
+     *  # The next command has no description, aliases, etc. defined, but is still valid
+     *  # Having an empty declaration is useful for defining the description, permission, and messages from a configuration dynamically
+     *  apocalypse:
+     *</pre></blockquote>
+     *
+     * @return the commands this plugin will register
+     */
+    public Map<String, Map<String, Object>> getCommands() {
+        return commands;
     }
 
+    /**
+     * Gives the list of permissions the plugin will register at runtime,
+     * immediately proceding enabling. The format for defining permissions is
+     * a map from permission name to properties. To represent a map without
+     * any specific property, empty <a
+     * href="http://yaml.org/spec/current.html#id2502702">curly-braces</a> (
+     * <code>&#123;&#125;</code> ) may be used (as a null value is not
+     * accepted, unlike the {@link #getCommands() commands} above).
+     * <p>
+     * A list of optional properties for permissions:
+     * <table border=1>
+     * <tr>
+     *     <th>Node</th>
+     *     <th>Description</th>
+     *     <th>Example</th>
+     * </tr><tr>
+     *     <td><code>description</code></td>
+     *     <td>Plaintext (user-friendly) description of what the permission
+     *         is for.</td>
+     *     <td><blockquote><pre>description: Allows you to set yourself on fire</pre></blockquote></td>
+     * </tr><tr>
+     *     <td><code>default</code></td>
+     *     <td>The default state for the permission, as defined by {@link
+     *         Permission#getDefault()}. If not defined, it will be set to
+     *         the value of {@link PluginDescriptionFile#getPermissionDefault()}.
+     *         <p>
+     *         For reference:<ul>
+     *         <li><code>true</code> - Represents a positive assignment to
+     *             {@link Permissible permissibles}.
+     *         <li><code>false</code> - Represents no assignment to {@link
+     *             Permissible permissibles}.
+     *         <li><code>op</code> - Represents a positive assignment to
+     *             {@link Permissible#isOp() operator permissibles}.
+     *         <li><code>notop</code> - Represents a positive assignment to
+     *             {@link Permissible#isOp() non-operator permissibiles}.
+     *         </ul></td>
+     *     <td><blockquote><pre>default: true</pre></blockquote></td>
+     * </tr><tr>
+     *     <td><code>children</code></td>
+     *     <td>Allows other permissions to be set as a {@linkplain
+     *         Permission#getChildren() relation} to the parent permission.
+     *         When a parent permissions is assigned, child permissions are
+     *         respectively assigned as well.
+     *         <ul>
+     *         <li>When a parent permission is assigned negatively, child
+     *             permissions are assigned based on an inversion of their
+     *             association.
+     *         <li>When a parent permission is assigned positively, child
+     *             permissions are assigned based on their association.
+     *         </ul>
+     *         <p>
+     *         Child permissions may be defined in a number of ways:<ul>
+     *         <li>Children may be defined as a <a
+     *             href="http://en.wikipedia.org/wiki/YAML#Lists">list</a> of
+     *             names. Using a list will treat all children associated
+     *             positively to their parent.
+     *         <li>Children may be defined as a map. Each permission name maps
+     *             to either a boolean (representing the association), or a
+     *             nested permission definition (just as another permission).
+     *             Using a nested definition treats the child as a positive
+     *             association.
+     *         <li>A nested permission definition must be a map of these same
+     *             properties. To define a valid nested permission without
+     *             defining any specific property, empty curly-braces (
+     *             <code>&#123;&#125;</code> ) must be used.
+     *          <li>A nested permission may carry it's own nested permissions
+     *              as children, as they may also have nested permissions, and
+     *              so forth. There is no direct limit to how deep the
+     *              permission tree is defined.
+     *         </ul></td>
+     *     <td>As a list:
+     *         <blockquote><pre>children: [inferno.flagrate, inferno.burningdeaths]</pre></blockquote>
+     *         Or as a mapping:
+     *         <blockquote><pre>children:
+     *  inferno.flagrate: true
+     *  inferno.burningdeaths: true</pre></blockquote>
+     *         An additional example showing basic nested values can be seen
+     *         <a href="doc-files/permissions-example_plugin.yml">here</a>.
+     *         </td>
+     * </tr>
+     * </table>
+     * The permissions are structured as a hiearchy of <a
+     * href="http://yaml.org/spec/current.html#id2502325">nested mappings</a>.
+     * The primary (top-level, no intendentation) node is
+     * `<code>permissions</code>', while each individual permission name is
+     * indented, indicating it maps to some value (in our case, the
+     * properties of the table above).
+     * <p>
+     * Here is an example using some of the properties:<blockquote><pre>
+     *permissions:
+     *  inferno.*:
+     *    description: Gives access to all Inferno commands
+     *    children:
+     *      inferno.flagrate: true
+     *      inferno.burningdeaths: true
+     *  inferno.flagate:
+     *    description: Allows you to ignite yourself
+     *    default: true
+     *  inferno.burningdeaths:
+     *    description: Allows you to see how many times you have burned to death
+     *    default: true
+     *</pre></blockquote>
+     * Another example, with nested definitions, can be found <a
+     * href="doc-files/permissions-example_plugin.yml">here</a>.
+     */
     public List<Permission> getPermissions() {
         if (permissions == null) {
             if (lazyPermissions == null) {
@@ -171,16 +741,53 @@ public final class PluginDescriptionFile {
         return permissions;
     }
 
+    /**
+     * Gives the default {@link Permission#getDefault() default} state of
+     * {@link #getPermissions() permissions} registered for the plugin.
+     * <ul>
+     * <li>If not specified, it will be {@link PermissionDefault#OP}.
+     * <li>It is matched using {@link PermissionDefault#getByName(String)}
+     * <li>It only affects permissions that do not define the
+     *     <code>default</code> node.
+     * <li>It may be any value in {@link PermissionDefault}.
+     * </ul>
+     * <p>
+     * In the plugin.yml, this entry is named <code>default-permission</code>.
+     * <p>
+     * Example:<blockquote><pre>default-permission: NOT_OP</pre></blockquote>
+     *
+     * @return the default value for the plugin's permissions
+     */
     public PermissionDefault getPermissionDefault() {
         return defaultPerm;
     }
 
+    /**
+     * Returns the name of a plugin, including the version. This method is
+     * provided for convenience; it uses the {@link #getName()} and {@link
+     * #getVersion()} entries.
+     *
+     * @return a descriptive name of the plugin and respective version
+     */
+    public String getFullName() {
+        return name + " v" + version;
+    }
+
     public String getClassLoaderOf() {
         return classLoaderOf;
     }
 
-    public String getPrefix() {
-        return prefix;
+    public void setDatabaseEnabled(boolean database) {
+        this.database = database;
+    }
+
+    /**
+     * Saves this PluginDescriptionFile to the given writer
+     *
+     * @param writer Writer to output this file to
+     */
+    public void save(Writer writer) {
+        yaml.dump(saveMap(), writer);
     }
 
     private void loadMap(Map<?, ?> map) throws InvalidDescriptionException {
diff --git a/src/main/java/org/bukkit/plugin/java/JavaPlugin.java b/src/main/java/org/bukkit/plugin/java/JavaPlugin.java
index 58baf478..49d39893 100644
--- a/src/main/java/org/bukkit/plugin/java/JavaPlugin.java
+++ b/src/main/java/org/bukkit/plugin/java/JavaPlugin.java
@@ -307,10 +307,12 @@ public abstract class JavaPlugin extends PluginBase {
     }
 
     /**
-     * Gets the command with the given name, specific to this plugin
+     * Gets the command with the given name, specific to this plugin. Commands
+     * need to be registered in the {@link PluginDescriptionFile#getCommands()
+     * PluginDescriptionFile} to exist at runtime.
      *
-     * @param name Name or alias of the command
-     * @return PluginCommand if found, otherwise null
+     * @param name name or alias of the command
+     * @return the plugin command if found, otherwise null
      */
     public PluginCommand getCommand(String name) {
         String alias = name.toLowerCase();
diff --git a/src/main/java/org/bukkit/scoreboard/Objective.java b/src/main/java/org/bukkit/scoreboard/Objective.java
index 5c09a0e9..fd307ebc 100644
--- a/src/main/java/org/bukkit/scoreboard/Objective.java
+++ b/src/main/java/org/bukkit/scoreboard/Objective.java
@@ -88,7 +88,6 @@ public interface Objective {
     /**
      * Gets a player's Score for an Objective on this Scoreboard
      *
-     * @param objective Objective for the Score
      * @param player Player for the Score
      * @return Score tracking the Objective and player specified
      * @throws IllegalArgumentException if player is null
diff --git a/src/main/java/org/bukkit/scoreboard/Team.java b/src/main/java/org/bukkit/scoreboard/Team.java
index c0773e39..b3269618 100644
--- a/src/main/java/org/bukkit/scoreboard/Team.java
+++ b/src/main/java/org/bukkit/scoreboard/Team.java
@@ -158,7 +158,6 @@ public interface Team {
     /**
      * Unregisters this team from the Scoreboard
      *
-     * @param team Team to unregister
      * @throws IllegalStateException if this team has been unregistered
      */
     void unregister() throws IllegalStateException;
diff --git a/src/main/javadoc/org/bukkit/plugin/doc-files/permissions-example_plugin.yml b/src/main/javadoc/org/bukkit/plugin/doc-files/permissions-example_plugin.yml
new file mode 100644
index 00000000..34d0381a
--- /dev/null
+++ b/src/main/javadoc/org/bukkit/plugin/doc-files/permissions-example_plugin.yml
@@ -0,0 +1,64 @@
+name: ScrapBukkit
+main: com.dinnerbone.bukkit.scrap.ScrapBukkit
+version: 1.0.0
+website: http://www.bukkit.org
+author: The Bukkit Team
+description: >
+             Miscellaneous administrative commands for Bukkit.
+             This plugin is one of the default plugins shipped with Bukkit.
+# commands: snipped
+
+permissions:
+  scrapbukkit.*:
+    description: Gives all permissions for Scrapbukkit
+    default: op
+    children:
+      scrapbukkit.remove:
+        description: Allows the player to remove items from anyones inventory
+        children:
+          scrapbukkit.remove.self:
+            description: Allows the player to remove items from their own inventory
+          scrapbukkit.remove.other:
+            description: Allows the player to remove items from other peoples inventory
+
+      scrapbukkit.time:
+        description: Allows the player to view and change the time
+        children:
+          scrapbukkit.time.view:
+            description: Allows the player to view the time
+            default: true
+          scrapbukkit.time.change:
+            description: Allows the player to change the time
+
+      scrapbukkit.tp:
+        description: Allows the player to teleport anyone to anyone else
+        children:
+          scrapbukkit.tp.here:
+            description: Allows the player to teleport other players to themselves
+          scrapbukkit.tp.self:
+            description: Allows the player to teleport themselves to another player
+          scrapbukkit.tp.other:
+            description: Allows the player to teleport anyone to another player
+
+      scrapbukkit.give:
+        description: Allows the player to give items
+        children:
+          scrapbukkit.give.self:
+            description: Allows the player to give themselves items
+          scrapbukkit.give.other:
+            description: Allows the player to give other players items
+
+      scrapbukkit.clear:
+        description: Allows the player to clear inventories
+        children:
+          scrapbukkit.clear.self:
+            description: Allows the player to clear their own inventory
+          scrapbukkit.clear.other:
+            description: Allows the player to clear other players inventory
+
+      scrapbukkit.some.standard.perm: {}
+      scrapbukkit.some.other.perm: true
+      scrapbukkit.some.bad.perm: false
+  # This is defined here individually, as simply giving it an association will not cause it to exist at runtime
+  scrapbukkit.some.bad.perm: {}
+  scrapbukkit.some.other.perm: {}