From 5f8de423f190bbb79a62f804151bc24824fa32d8 Mon Sep 17 00:00:00 2001 From: "Matt A. Tobin" Date: Fri, 2 Feb 2018 04:16:08 -0500 Subject: Add m-esr52 at 52.6.0 --- python/altgraph/doc/_build/html/.buildinfo | 4 + .../doc/_build/html/_sources/changelog.txt | 176 +++++ python/altgraph/doc/_build/html/_sources/core.txt | 26 + python/altgraph/doc/_build/html/_sources/dot.txt | 224 ++++++ python/altgraph/doc/_build/html/_sources/graph.txt | 299 ++++++++ .../doc/_build/html/_sources/graphalgo.txt | 26 + .../doc/_build/html/_sources/graphstat.txt | 25 + .../doc/_build/html/_sources/graphutil.txt | 55 ++ python/altgraph/doc/_build/html/_sources/index.txt | 41 ++ .../altgraph/doc/_build/html/_sources/license.txt | 25 + .../doc/_build/html/_sources/objectgraph.txt | 134 ++++ .../doc/_build/html/_static/ajax-loader.gif | Bin 0 -> 673 bytes python/altgraph/doc/_build/html/_static/basic.css | 537 ++++++++++++++ .../doc/_build/html/_static/comment-bright.png | Bin 0 -> 3500 bytes .../doc/_build/html/_static/comment-close.png | Bin 0 -> 3578 bytes 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python/altgraph/doc/_build/html/searchindex.js (limited to 'python/altgraph/doc/_build/html') diff --git a/python/altgraph/doc/_build/html/.buildinfo b/python/altgraph/doc/_build/html/.buildinfo new file mode 100644 index 000000000..003a04976 --- /dev/null +++ b/python/altgraph/doc/_build/html/.buildinfo @@ -0,0 +1,4 @@ +# Sphinx build info version 1 +# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. +config: 84aa655833f036f5ba0f6f2dbd1945fa +tags: 645f666f9bcd5a90fca523b33c5a78b7 diff --git a/python/altgraph/doc/_build/html/_sources/changelog.txt b/python/altgraph/doc/_build/html/_sources/changelog.txt new file mode 100644 index 000000000..e491c9544 --- /dev/null +++ b/python/altgraph/doc/_build/html/_sources/changelog.txt @@ -0,0 +1,176 @@ +Release history +=============== + +0.11 +---- + +- Stabilize the order of elements in dot file exports, + patch from bitbucket user 'pombredanne'. + +- Tweak setup.py file to remove dependency on distribute (but + keep the dependency on setuptools) + + +0.10.2 +------ + +- There where no classifiers in the package metadata due to a bug + in setup.py + +0.10.1 +------ + +This is a bugfix release + +Bug fixes: + +- Issue #3: The source archive contains a README.txt + while the setup file refers to ReadMe.txt. + + This is caused by a misfeature in distutils, as a + workaround I've renamed ReadMe.txt to README.txt + in the source tree and setup file. + + +0.10 +----- + +This is a minor feature release + +Features: + +- Do not use "2to3" to support Python 3. + + As a side effect of this altgraph now supports + Python 2.6 and later, and no longer supports + earlier releases of Python. + +- The order of attributes in the Dot output + is now always alphabetical. + + With this change the output will be consistent + between runs and Python versions. + +0.9 +--- + +This is a minor bugfix release + +Features: + +- Added ``altgraph.ObjectGraph.ObjectGraph.nodes``, a method + yielding all nodes in an object graph. + +Bugfixes: + +- The 0.8 release didn't work with py2app when using + python 3.x. + + +0.8 +----- + +This is a minor feature release. The major new feature +is a extensive set of unittests, which explains almost +all other changes in this release. + +Bugfixes: + +- Installing failed with Python 2.5 due to using a distutils + class that isn't available in that version of Python + (issue #1 on the issue tracker) + +- ``altgraph.GraphStat.degree_dist`` now actually works + +- ``altgraph.Graph.add_edge(a, b, create_nodes=False)`` will + no longer create the edge when one of the nodes doesn't + exist. + +- ``altgraph.Graph.forw_topo_sort`` failed for some sparse graphs. + +- ``altgraph.Graph.back_topo_sort`` was completely broken in + previous releases. + +- ``altgraph.Graph.forw_bfs_subgraph`` now actually works. + +- ``altgraph.Graph.back_bfs_subgraph`` now actually works. + +- ``altgraph.Graph.iterdfs`` now returns the correct result + when the ``forward`` argument is ``False``. + +- ``altgraph.Graph.iterdata`` now returns the correct result + when the ``forward`` argument is ``False``. + + +Features: + +- The ``altgraph.Graph`` constructor now accepts an argument + that contains 2- and 3-tuples instead of requireing that + all items have the same size. The (optional) argument can now + also be any iterator. + +- ``altgraph.Graph.Graph.add_node`` has no effect when you + add a hidden node. + +- The private method ``altgraph.Graph._bfs`` is no longer + present. + +- The private method ``altgraph.Graph._dfs`` is no longer + present. + +- ``altgraph.ObjectGraph`` now has a ``__contains__`` methods, + which means you can use the ``in`` operator to check if a + node is part of a graph. + +- ``altgraph.GraphUtil.generate_random_graph`` will raise + ``GraphError`` instead of looping forever when it is + impossible to create the requested graph. + +- ``altgraph.Dot.edge_style`` raises ``GraphError`` when + one of the nodes is not present in the graph. The method + silently added the tail in the past, but without ensuring + a consistent graph state. + +- ``altgraph.Dot.save_img`` now works when the mode is + ``"neato"``. + +0.7.2 +----- + +This is a minor bugfix release + +Bugfixes: + +- distutils didn't include the documentation subtree + +0.7.1 +----- + +This is a minor feature release + +Features: + +- Documentation is now generated using `sphinx `_ + and can be viewed at . + +- The repository has moved to bitbucket + +- ``altgraph.GraphStat.avg_hops`` is no longer present, the function had no + implementation and no specified behaviour. + +- the module ``altgraph.compat`` is gone, which means altgraph will no + longer work with Python 2.3. + + +0.7.0 +----- + +This is a minor feature release. + +Features: + +- Support for Python 3 + +- It is now possible to run tests using 'python setup.py test' + + (The actual testsuite is still very minimal though) diff --git a/python/altgraph/doc/_build/html/_sources/core.txt b/python/altgraph/doc/_build/html/_sources/core.txt new file mode 100644 index 000000000..8288f6a94 --- /dev/null +++ b/python/altgraph/doc/_build/html/_sources/core.txt @@ -0,0 +1,26 @@ +:mod:`altgraph` --- A Python Graph Library +================================================== + +.. module:: altgraph + :synopsis: A directional graph for python + +altgraph is a fork of `graphlib `_ tailored +to use newer Python 2.3+ features, including additional support used by the +py2app suite (modulegraph and macholib, specifically). + +altgraph is a python based graph (network) representation and manipulation package. +It has started out as an extension to the `graph_lib module `_ +written by Nathan Denny it has been significantly optimized and expanded. + +The :class:`altgraph.Graph.Graph` class is loosely modeled after the `LEDA `_ +(Library of Efficient Datatypes) representation. The library +includes methods for constructing graphs, BFS and DFS traversals, +topological sort, finding connected components, shortest paths as well as a number +graph statistics functions. The library can also visualize graphs +via `graphviz `_. + + +.. exception:: GraphError + + Exception raised when methods are called with bad values of + an inconsistent state. diff --git a/python/altgraph/doc/_build/html/_sources/dot.txt b/python/altgraph/doc/_build/html/_sources/dot.txt new file mode 100644 index 000000000..3848c488a --- /dev/null +++ b/python/altgraph/doc/_build/html/_sources/dot.txt @@ -0,0 +1,224 @@ +:mod:`altgraph.Dot` --- Interface to the dot language +===================================================== + +.. module:: altgraph.Dot + :synopsis: Interface to the dot language as used by Graphviz.. + +The :py:mod:`~altgraph.Dot` module provides a simple interface to the +file format used in the `graphviz`_ program. The module is intended to +offload the most tedious part of the process (the **dot** file generation) +while transparently exposing most of its features. + +.. _`graphviz`: `_ + +To display the graphs or to generate image files the `graphviz`_ +package needs to be installed on the system, moreover the :command:`dot` and :command:`dotty` programs must +be accesible in the program path so that they can be ran from processes spawned +within the module. + +Example usage +------------- + +Here is a typical usage:: + + from altgraph import Graph, Dot + + # create a graph + edges = [ (1,2), (1,3), (3,4), (3,5), (4,5), (5,4) ] + graph = Graph.Graph(edges) + + # create a dot representation of the graph + dot = Dot.Dot(graph) + + # display the graph + dot.display() + + # save the dot representation into the mydot.dot file + dot.save_dot(file_name='mydot.dot') + + # save dot file as gif image into the graph.gif file + dot.save_img(file_name='graph', file_type='gif') + + +Directed graph and non-directed graph +------------------------------------- + +Dot class can use for both directed graph and non-directed graph +by passing *graphtype* parameter. + +Example:: + + # create directed graph(default) + dot = Dot.Dot(graph, graphtype="digraph") + + # create non-directed graph + dot = Dot.Dot(graph, graphtype="graph") + + +Customizing the output +---------------------- + +The graph drawing process may be customized by passing +valid :command:`dot` parameters for the nodes and edges. For a list of all +parameters see the `graphviz`_ documentation. + +Example:: + + # customizing the way the overall graph is drawn + dot.style(size='10,10', rankdir='RL', page='5, 5' , ranksep=0.75) + + # customizing node drawing + dot.node_style(1, label='BASE_NODE',shape='box', color='blue' ) + dot.node_style(2, style='filled', fillcolor='red') + + # customizing edge drawing + dot.edge_style(1, 2, style='dotted') + dot.edge_style(3, 5, arrowhead='dot', label='binds', labelangle='90') + dot.edge_style(4, 5, arrowsize=2, style='bold') + + + .. note:: + + dotty (invoked via :py:func:`~altgraph.Dot.display`) may not be able to + display all graphics styles. To verify the output save it to an image + file and look at it that way. + +Valid attributes +---------------- + +- dot styles, passed via the :py:meth:`Dot.style` method:: + + rankdir = 'LR' (draws the graph horizontally, left to right) + ranksep = number (rank separation in inches) + +- node attributes, passed via the :py:meth:`Dot.node_style` method:: + + style = 'filled' | 'invisible' | 'diagonals' | 'rounded' + shape = 'box' | 'ellipse' | 'circle' | 'point' | 'triangle' + +- edge attributes, passed via the :py:meth:`Dot.edge_style` method:: + + style = 'dashed' | 'dotted' | 'solid' | 'invis' | 'bold' + arrowhead = 'box' | 'crow' | 'diamond' | 'dot' | 'inv' | 'none' | 'tee' | 'vee' + weight = number (the larger the number the closer the nodes will be) + +- valid `graphviz colors `_ + +- for more details on how to control the graph drawing process see the + `graphviz reference `_. + + +Class interface +--------------- + +.. class:: Dot(graph[, nodes[, edgefn[, nodevisitor[, edgevisitor[, name[, dot[, dotty[, neato[, graphtype]]]]]]]]]) + + Creates a new Dot generator based on the specified + :class:`Graph `. The Dot generator won't reference + the *graph* once it is constructed. + + If the *nodes* argument is present it is the list of nodes to include + in the graph, otherwise all nodes in *graph* are included. + + If the *edgefn* argument is present it is a function that yields the + nodes connected to another node, this defaults to + :meth:`graph.out_nbr `. The constructor won't + add edges to the dot file unless both the head and tail of the edge + are in *nodes*. + + If the *name* is present it specifies the name of the graph in the resulting + dot file. The default is ``"G"``. + + The functions *nodevisitor* and *edgevisitor* return the default style + for a given edge or node (both default to functions that return an empty + style). + + The arguments *dot*, *dotty* and *neato* are used to pass the path to + the corresponding `graphviz`_ command. + + +Updating graph attributes +......................... + +.. method:: Dot.style(\**attr) + + Sets the overall style (graph attributes) to the given attributes. + + See `Valid Attributes`_ for more information about the attributes. + +.. method:: Dot.node_style(node, \**attr) + + Sets the style for *node* to the given attributes. + + This method will add *node* to the graph when it isn't already + present. + + See `Valid Attributes`_ for more information about the attributes. + +.. method:: Dot.all_node_style(\**attr) + + Replaces the current style for all nodes + + +.. method:: edge_style(head, tail, \**attr) + + Sets the style of an edge to the given attributes. The edge will + be added to the graph when it isn't already present, but *head* + and *tail* must both be valid nodes. + + See `Valid Attributes`_ for more information about the attributes. + + + +Emitting output +............... + +.. method:: Dot.display([mode]) + + Displays the current graph via dotty. + + If the *mode* is ``"neato"`` the dot file is processed with + the neato command before displaying. + + This method won't return until the dotty command exits. + +.. method:: save_dot(filename) + + Saves the current graph representation into the given file. + + .. note:: + + For backward compatibility reasons this method can also + be called without an argument, it will then write the graph + into a fixed filename (present in the attribute :data:`Graph.temp_dot`). + + This feature is deprecated and should not be used. + + +.. method:: save_image(file_name[, file_type[, mode]]) + + Saves the current graph representation as an image file. The output + is written into a file whose basename is *file_name* and whose suffix + is *file_type*. + + The *file_type* specifies the type of file to write, the default + is ``"gif"``. + + If the *mode* is ``"neato"`` the dot file is processed with + the neato command before displaying. + + .. note:: + + For backward compatibility reasons this method can also + be called without an argument, it will then write the graph + with a fixed basename (``"out"``). + + This feature is deprecated and should not be used. + +.. method:: iterdot() + + Yields all lines of a `graphviz`_ input file (including line endings). + +.. method:: __iter__() + + Alias for the :meth:`iterdot` method. diff --git a/python/altgraph/doc/_build/html/_sources/graph.txt b/python/altgraph/doc/_build/html/_sources/graph.txt new file mode 100644 index 000000000..72e36bbc1 --- /dev/null +++ b/python/altgraph/doc/_build/html/_sources/graph.txt @@ -0,0 +1,299 @@ +:mod:`altgraph.Graph` --- Basic directional graphs +================================================== + +.. module:: altgraph.Graph + :synopsis: Basic directional graphs. + +The module :mod:`altgraph.Graph` provides a class :class:`Graph` that +represents a directed graph with *N* nodes and *E* edges. + +.. class:: Graph([edges]) + + Constructs a new empty :class:`Graph` object. If the optional + *edges* parameter is supplied, updates the graph by adding the + specified edges. + + All of the elements in *edges* should be tuples with two or three + elements. The first two elements of the tuple are the source and + destination node of the edge, the optional third element is the + edge data. The source and destination nodes are added to the graph + when the aren't already present. + + +Node related methods +-------------------- + +.. method:: Graph.add_node(node[, node_data]) + + Adds a new node to the graph if it is not already present. The new + node must be a hashable object. + + Arbitrary data can be attached to the node via the optional *node_data* + argument. + + .. note:: the node also won't be added to the graph when it is + present but currently hidden. + + +.. method:: Graph.hide_node(node) + + Hides a *node* from the graph. The incoming and outgoing edges of + the node will also be hidden. + + Raises :class:`altgraph.GraphError` when the node is not (visible) + node of the graph. + + +.. method:: Graph.restore_node(node) + + Restores a previously hidden *node*. The incoming and outgoing + edges of the node are also restored. + + Raises :class:`altgraph.GraphError` when the node is not a hidden + node of the graph. + +.. method:: Graph.restore_all_nodes() + + Restores all hidden nodes. + +.. method:: Graph.number_of_nodes() + + Return the number of visible nodes in the graph. + +.. method:: Graph.number_of_hidden_nodes() + + Return the number of hidden nodes in the graph. + +.. method:: Graph.node_list() + + Return a list with all visible nodes in the graph. + +.. method:: Graph.hidden_node_list() + + Return a list with all hidden nodes in the graph. + +.. method:: node_data(node) + + Return the data associated with the *node* when it was + added. + +.. method:: Graph.describe_node(node) + + Returns *node*, the node's data and the lists of outgoing + and incoming edges for the node. + + .. note:: + + the edge lists should not be modified, doing so + can result in unpredicatable behavior. + +.. method:: Graph.__contains__(node) + + Returns True iff *node* is a node in the graph. This + method is accessed through the *in* operator. + +.. method:: Graph.__iter__() + + Yield all nodes in the graph. + +.. method:: Graph.out_edges(node) + + Return the list of outgoing edges for *node* + +.. method:: Graph.inc_edges(node) + + Return the list of incoming edges for *node* + +.. method:: Graph.all_edges(node) + + Return the list of incoming and outgoing edges for *node* + +.. method:: Graph.out_degree(node) + + Return the number of outgoing edges for *node*. + +.. method:: Graph.inc_degree(node) + + Return the number of incoming edges for *node*. + +.. method:: Graph.all_degree(node) + + Return the number of edges (incoming or outgoing) for *node*. + +Edge related methods +-------------------- + +.. method:: Graph.add_edge(head_id, tail_id [, edge data [, create_nodes]]) + + Adds a directed edge from *head_id* to *tail_id*. Arbitrary data can + be added via *edge_data*. When *create_nodes* is *True* (the default), + *head_id* and *tail_id* will be added to the graph when the aren't + already present. + +.. method:: Graph.hide_edge(edge) + + Hides an edge from the graph. The edge may be unhidden at some later + time. + +.. method:: Graph.restore_edge(edge) + + Restores a previously hidden *edge*. + +.. method:: Graph.restore_all_edges() + + Restore all edges that were hidden before, except for edges + referring to hidden nodes. + +.. method:: Graph.edge_by_node(head, tail) + + Return the edge ID for an edge from *head* to *tail*, + or :data:`None` when no such edge exists. + +.. method:: Graph.edge_by_id(edge) + + Return the head and tail of the *edge* + +.. method:: Graph.edge_data(edge) + + Return the data associated with the *edge*. + + +.. method:: Graph.head(edge) + + Return the head of an *edge* + +.. method:: Graph.tail(edge) + + Return the tail of an *edge* + +.. method:: Graph.describe_edge(edge) + + Return the *edge*, the associated data, its head and tail. + +.. method:: Graph.number_of_edges() + + Return the number of visible edges. + +.. method:: Graph.number_of_hidden_edges() + + Return the number of hidden edges. + +.. method:: Graph.edge_list() + + Returns a list with all visible edges in the graph. + +.. method:: Graph.hidden_edge_list() + + Returns a list with all hidden edges in the graph. + +Graph traversal +--------------- + +.. method:: Graph.out_nbrs(node) + + Return a list of all nodes connected by outgoing edges. + +.. method:: Graph.inc_nbrs(node) + + Return a list of all nodes connected by incoming edges. + +.. method:: Graph.all_nbrs(node) + + Returns a list of nodes connected by an incoming or outgoing edge. + +.. method:: Graph.forw_topo_sort() + + Return a list of nodes where the successors (based on outgoing + edges) of any given node apear in the sequence after that node. + +.. method:: Graph.back_topo_sort() + + Return a list of nodes where the successors (based on incoming + edges) of any given node apear in the sequence after that node. + +.. method:: Graph.forw_bfs_subgraph(start_id) + + Return a subgraph consisting of the breadth first + reachable nodes from *start_id* based on their outgoing edges. + + +.. method:: Graph.back_bfs_subgraph(start_id) + + Return a subgraph consisting of the breadth first + reachable nodes from *start_id* based on their incoming edges. + +.. method:: Graph.iterdfs(start[, end[, forward]]) + + Yield nodes in a depth first traversal starting at the *start* + node. + + If *end* is specified traversal stops when reaching that node. + + If forward is True (the default) edges are traversed in forward + direction, otherwise they are traversed in reverse direction. + +.. method:: Graph.iterdata(start[, end[, forward[, condition]]]) + + Yield the associated data for nodes in a depth first traversal + starting at the *start* node. This method will not yield values for nodes + without associated data. + + If *end* is specified traversal stops when reaching that node. + + If *condition* is specified and the condition callable returns + False for the associated data this method will not yield the + associated data and will not follow the edges for the node. + + If forward is True (the default) edges are traversed in forward + direction, otherwise they are traversed in reverse direction. + +.. method:: Graph.forw_bfs(start[, end]) + + Returns a list of nodes starting at *start* in some bread first + search order (following outgoing edges). + + When *end* is specified iteration stops at that node. + +.. method:: Graph.back_bfs(start[, end]) + + Returns a list of nodes starting at *start* in some bread first + search order (following incoming edges). + + When *end* is specified iteration stops at that node. + +.. method:: Graph.get_hops(start[, end[, forward]]) + + Computes the hop distance to all nodes centered around a specified node. + + First order neighbours are at hop 1, their neigbours are at hop 2 etc. + Uses :py:meth:`forw_bfs` or :py:meth:`back_bfs` depending on the value of + the forward parameter. + + If the distance between all neighbouring nodes is 1 the hop number + corresponds to the shortest distance between the nodes. + + Typical usage:: + + >>> print graph.get_hops(1, 8) + >>> [(1, 0), (2, 1), (3, 1), (4, 2), (5, 3), (7, 4), (8, 5)] + # node 1 is at 0 hops + # node 2 is at 1 hop + # ... + # node 8 is at 5 hops + + +Graph statistics +---------------- + +.. method:: Graph.connected() + + Returns True iff every node in the graph can be reached from + every other node. + +.. method:: Graph.clust_coef(node) + + Returns the local clustering coefficient of node. + + The local cluster coefficient is the proportion of the actual number + of edges between neighbours of node and the maximum number of + edges between those nodes. diff --git a/python/altgraph/doc/_build/html/_sources/graphalgo.txt b/python/altgraph/doc/_build/html/_sources/graphalgo.txt new file mode 100644 index 000000000..84d492f44 --- /dev/null +++ b/python/altgraph/doc/_build/html/_sources/graphalgo.txt @@ -0,0 +1,26 @@ +:mod:`altgraph.GraphAlgo` --- Graph algorithms +================================================== + +.. module:: altgraph.GraphAlgo + :synopsis: Basic graphs algoritms + +.. function:: dijkstra(graph, start[, end]) + + Dijkstra's algorithm for shortest paths. + + Find shortest paths from the start node to all nodes nearer + than or equal to the *end* node. The edge data is assumed to be the edge length. + + .. note:: + + Dijkstra's algorithm is only guaranteed to work correctly when all edge lengths are positive. + This code does not verify this property for all edges (only the edges examined until the end + vertex is reached), but will correctly compute shortest paths even for some graphs with negative + edges, and will raise an exception if it discovers that a negative edge has caused it to make a mistake. + + +.. function:: shortest_path(graph, start, end) + + Find a single shortest path from the given start node to the given end node. + The input has the same conventions as :func:`dijkstra`. The output is a list + of the nodes in order along the shortest path. diff --git a/python/altgraph/doc/_build/html/_sources/graphstat.txt b/python/altgraph/doc/_build/html/_sources/graphstat.txt new file mode 100644 index 000000000..0931a12dd --- /dev/null +++ b/python/altgraph/doc/_build/html/_sources/graphstat.txt @@ -0,0 +1,25 @@ +:mod:`altgraph.GraphStat` --- Functions providing various graph statistics +========================================================================== + +.. module:: altgraph.GraphStat + :synopsis: Functions providing various graph statistics + +The module :mod:`altgraph.GraphStat` provides function that calculate +graph statistics. Currently there is only one such function, more may +be added later. + +.. function:: degree_dist(graph[, limits[, bin_num[, mode]]]) + + Groups the number of edges per node into *bin_num* bins + and returns the list of those bins. Every item in the result + is a tuple with the center of the bin and the number of items + in that bin. + + When the *limits* argument is present it must be a tuple with + the mininum and maximum number of edges that get binned (that + is, when *limits* is ``(4, 10)`` only nodes with between 4 + and 10 edges get counted. + + The *mode* argument is used to count incoming (``'inc'``) or + outgoing (``'out'``) edges. The default is to count the outgoing + edges. diff --git a/python/altgraph/doc/_build/html/_sources/graphutil.txt b/python/altgraph/doc/_build/html/_sources/graphutil.txt new file mode 100644 index 000000000..c07836df8 --- /dev/null +++ b/python/altgraph/doc/_build/html/_sources/graphutil.txt @@ -0,0 +1,55 @@ +:mod:`altgraph.GraphUtil` --- Utility functions +================================================ + +.. module:: altgraph.GraphUtil + :synopsis: Utility functions + +The module :mod:`altgraph.GraphUtil` performs a number of more +or less useful utility functions. + +.. function:: generate_random_graph(node_num, edge_num[, self_loops[, multi_edges]) + + Generates and returns a :class:`Graph ` instance + with *node_num* nodes randomly connected by *edge_num* edges. + + When *self_loops* is present and True there can be edges that point from + a node to itself. + + When *multi_edge* is present and True there can be duplicate edges. + + This method raises :class:`GraphError `_ + +.. function:: filter_stack(graph, head, filters) + + Perform a depth-first oder walk of the graph starting at *head* and + apply all filter functions in *filters* on the node data of the nodes + found. + + Returns (*visited*, *removes*, *orphans*), where + + * *visited*: the set of visited nodes + + * *removes*: the list of nodes where the node data doesn't match + all *filters*. + + * *orphans*: list of tuples (*last_good*, *node*), where + node is not in *removes* and one of the nodes that is connected + by an incoming edge is in *removes*. *Last_good* is the + closest upstream node that is not in *removes*. diff --git a/python/altgraph/doc/_build/html/_sources/index.txt b/python/altgraph/doc/_build/html/_sources/index.txt new file mode 100644 index 000000000..1e8d504ed --- /dev/null +++ b/python/altgraph/doc/_build/html/_sources/index.txt @@ -0,0 +1,41 @@ +.. altgraph documentation master file, created by + sphinx-quickstart on Tue Aug 31 11:04:49 2010. + You can adapt this file completely to your liking, but it should at least + contain the root `toctree` directive. + +Altgraph - A basic graph library +================================ + +altgraph is a fork of graphlib: a graph (network) package for constructing +graphs, BFS and DFS traversals, topological sort, shortest paths, etc. with +graphviz output. + +The primary users of this package are `macholib `_ and `modulegraph `_. + +.. toctree:: + :maxdepth: 1 + + changelog + license + core + graph + objectgraph + graphalgo + graphstat + graphutil + dot + +Online Resources +---------------- + +* `Sourcecode repository on bitbucket `_ + +* `The issue tracker `_ + +Indices and tables +------------------ + +* :ref:`genindex` +* :ref:`modindex` +* :ref:`search` + diff --git a/python/altgraph/doc/_build/html/_sources/license.txt b/python/altgraph/doc/_build/html/_sources/license.txt new file mode 100644 index 000000000..498e60be0 --- /dev/null +++ b/python/altgraph/doc/_build/html/_sources/license.txt @@ -0,0 +1,25 @@ +License +======= + +Copyright (c) 2004 Istvan Albert unless otherwise noted. + +Parts are copyright (c) Bob Ippolito + +Parts are copyright (c) 2010-2014 Ronald Oussoren + +MIT License +........... + +Permission is hereby granted, free of charge, to any person obtaining a copy of this software +and associated documentation files (the "Software"), to deal in the Software without restriction, +including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, +and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do +so. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR +PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE +FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, +ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN +THE SOFTWARE. + diff --git a/python/altgraph/doc/_build/html/_sources/objectgraph.txt b/python/altgraph/doc/_build/html/_sources/objectgraph.txt new file mode 100644 index 000000000..87485255f --- /dev/null +++ b/python/altgraph/doc/_build/html/_sources/objectgraph.txt @@ -0,0 +1,134 @@ +:mod:`altgraph.ObjectGraph` --- Graphs of objecs with an identifier +=================================================================== + +.. module:: altgraph.ObjectGraph + :synopsis: A graph of objects that have a "graphident" attribute. + +.. class:: ObjectGraph([graph[, debug]]) + + A graph of objects that have a "graphident" attribute. The + value of this attribute is the key for the object in the + graph. + + The optional *graph* is a previously constructed + :class:`Graph `. + + The optional *debug* level controls the amount of debug output + (see :meth:`msg`, :meth:`msgin` and :meth:`msgout`). + + .. note:: the altgraph library does not generate output, the + debug attribute and message methods are present for use + by subclasses. + +.. data:: ObjectGraph.graph + + An :class:`Graph ` object that contains + the graph data. + + +.. method:: ObjectGraph.addNode(node) + + Adds a *node* to the graph. + + .. note:: re-adding a node that was previously removed + using :meth:`removeNode` will reinstate the previously + removed node. + +.. method:: ObjectGraph.createNode(self, cls, name, \*args, \**kwds) + + Creates a new node using ``cls(*args, **kwds)`` and adds that + node using :meth:`addNode`. + + Returns the newly created node. + +.. method:: ObjectGraph.removeNode(node) + + Removes a *node* from the graph when it exists. The *node* argument + is either a node object, or the graphident of a node. + +.. method:: ObjectGraph.createReferences(fromnode, tonode[, edge_data]) + + Creates a reference from *fromnode* to *tonode*. The optional + *edge_data* is associated with the edge. + + *Fromnode* and *tonode* can either be node objects or the graphident + values for nodes. + +.. method:: removeReference(fromnode, tonode) + + Removes the reference from *fromnode* to *tonode* if it exists. + +.. method:: ObjectGraph.getRawIdent(node) + + Returns the *graphident* attribute of *node*, or the graph itself + when *node* is :data:`None`. + +.. method:: getIdent(node) + + Same as :meth:`getRawIdent`, but only if the node is part + of the graph. + + *Node* can either be an actual node object or the graphident of + a node. + +.. method:: ObjectGraph.findNode(node) + + Returns a given node in the graph, or :data:`Node` when it cannot + be found. + + *Node* is either an object with a *graphident* attribute or + the *graphident* attribute itself. + +.. method:: ObjectGraph.__contains__(node) + + Returns True if *node* is a member of the graph. *Node* is either an + object with a *graphident* attribute or the *graphident* attribute itself. + +.. method:: ObjectGraph.flatten([condition[, start]]) + + Yield all nodes that are entirely reachable by *condition* + starting fromt he given *start* node or the graph root. + + .. note:: objects are only reachable from the graph root + when there is a reference from the root to the node + (either directly or through another node) + +.. method:: ObjectGraph.nodes() + + Yield all nodes in the graph. + +.. method:: ObjectGraph.get_edges(node) + + Returns two iterators that yield the nodes reaching by + outgoing and incoming edges. + +.. method:: ObjectGraph.filterStack(filters) + + Filter the ObjectGraph in-place by removing all edges to nodes that + do not match every filter in the given filter list + + Returns a tuple containing the number of: + (*nodes_visited*, *nodes_removed*, *nodes_orphaned*) + + +Debug output +------------ + +.. data:: ObjectGraph.debug + + The current debug level. + +.. method:: ObjectGraph.msg(level, text, \*args) + + Print a debug message at the current indentation level when the current + debug level is *level* or less. + +.. method:: ObjectGraph.msgin(level, text, \*args) + + Print a debug message when the current debug level is *level* or less, + and increase the indentation level. + +.. method:: ObjectGraph.msgout(level, text, \*args) + + Decrease the indentation level and print a debug message when the + current debug level is *level* or less. diff --git a/python/altgraph/doc/_build/html/_static/ajax-loader.gif b/python/altgraph/doc/_build/html/_static/ajax-loader.gif new file mode 100644 index 000000000..61faf8cab Binary files /dev/null and b/python/altgraph/doc/_build/html/_static/ajax-loader.gif differ diff --git a/python/altgraph/doc/_build/html/_static/basic.css b/python/altgraph/doc/_build/html/_static/basic.css new file mode 100644 index 000000000..c959cf0db --- /dev/null +++ b/python/altgraph/doc/_build/html/_static/basic.css @@ -0,0 +1,537 @@ +/* + * basic.css + * ~~~~~~~~~ + * + * Sphinx stylesheet -- basic theme. + * + * :copyright: Copyright 2007-2013 by the Sphinx team, see AUTHORS. + * :license: BSD, see LICENSE for details. + * + */ + +/* -- main layout ----------------------------------------------------------- */ + +div.clearer { + clear: both; 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full-text search. + * + * :copyright: Copyright 2007-2013 by the Sphinx team, see AUTHORS. + * :license: BSD, see LICENSE for details. + * + */ + + +/** + * Porter Stemmer + */ +var Stemmer = function() { + + var step2list = { + ational: 'ate', + tional: 'tion', + enci: 'ence', + anci: 'ance', + izer: 'ize', + bli: 'ble', + alli: 'al', + entli: 'ent', + eli: 'e', + ousli: 'ous', + ization: 'ize', + ation: 'ate', + ator: 'ate', + alism: 'al', + iveness: 'ive', + fulness: 'ful', + ousness: 'ous', + aliti: 'al', + iviti: 'ive', + biliti: 'ble', + logi: 'log' + }; + + var step3list = { + icate: 'ic', + ative: '', + alize: 'al', + iciti: 'ic', + ical: 'ic', + ful: '', + ness: '' + }; + + var c = "[^aeiou]"; // consonant + var v = "[aeiouy]"; // vowel + var C = c + "[^aeiouy]*"; // consonant sequence + var V = v + "[aeiou]*"; // vowel sequence + + var mgr0 = "^(" + C + ")?" + V + C; // [C]VC... is m>0 + var meq1 = "^(" + C + ")?" + V + C + "(" + V + ")?$"; // [C]VC[V] is m=1 + var mgr1 = "^(" + C + ")?" + V + C + V + C; // [C]VCVC... is m>1 + var s_v = "^(" + C + ")?" + v; // vowel in stem + + this.stemWord = function (w) { + var stem; + var suffix; + var firstch; + var origword = w; + + if (w.length < 3) + return w; + + var re; + var re2; + var re3; + var re4; + + firstch = w.substr(0,1); + if (firstch == "y") + w = firstch.toUpperCase() + w.substr(1); + + // Step 1a + re = /^(.+?)(ss|i)es$/; + re2 = /^(.+?)([^s])s$/; + + if (re.test(w)) + w = w.replace(re,"$1$2"); + else if (re2.test(w)) + w = w.replace(re2,"$1$2"); + + // Step 1b + re = /^(.+?)eed$/; + re2 = /^(.+?)(ed|ing)$/; + if (re.test(w)) { + var fp = re.exec(w); + re = new RegExp(mgr0); + if (re.test(fp[1])) { + re = /.$/; + w = w.replace(re,""); + } + } + else if (re2.test(w)) { + var fp = re2.exec(w); + stem = fp[1]; + re2 = new RegExp(s_v); + if (re2.test(stem)) { + w = stem; + re2 = /(at|bl|iz)$/; + re3 = new RegExp("([^aeiouylsz])\\1$"); + re4 = new RegExp("^" + C + v + "[^aeiouwxy]$"); + if (re2.test(w)) + w = w + "e"; + else if (re3.test(w)) { + re = /.$/; + w = w.replace(re,""); + } + else if (re4.test(w)) + w = w + "e"; + } + } + + // Step 1c + re = /^(.+?)y$/; + if (re.test(w)) { + var fp = re.exec(w); + stem = fp[1]; + re = new RegExp(s_v); + if (re.test(stem)) + w = stem + "i"; + } + + // Step 2 + re = /^(.+?)(ational|tional|enci|anci|izer|bli|alli|entli|eli|ousli|ization|ation|ator|alism|iveness|fulness|ousness|aliti|iviti|biliti|logi)$/; + if (re.test(w)) { + var fp = re.exec(w); + stem = fp[1]; + suffix = fp[2]; + re = new RegExp(mgr0); + if (re.test(stem)) + w = stem + step2list[suffix]; + } + + // Step 3 + re = /^(.+?)(icate|ative|alize|iciti|ical|ful|ness)$/; + if (re.test(w)) { + var fp = re.exec(w); + stem = fp[1]; + suffix = fp[2]; + re = new RegExp(mgr0); + if (re.test(stem)) + w = stem + step3list[suffix]; + } + + // Step 4 + re = /^(.+?)(al|ance|ence|er|ic|able|ible|ant|ement|ment|ent|ou|ism|ate|iti|ous|ive|ize)$/; + re2 = /^(.+?)(s|t)(ion)$/; + if (re.test(w)) { + var fp = re.exec(w); + stem = fp[1]; + re = new RegExp(mgr1); + if (re.test(stem)) + w = stem; + } + else if (re2.test(w)) { + var fp = re2.exec(w); + stem = fp[1] + fp[2]; + re2 = new RegExp(mgr1); + if (re2.test(stem)) + w = stem; + } + + // Step 5 + re = /^(.+?)e$/; + if (re.test(w)) { + var fp = re.exec(w); + stem = fp[1]; + re = new RegExp(mgr1); + re2 = new RegExp(meq1); + re3 = new RegExp("^" + C + v + "[^aeiouwxy]$"); + if (re.test(stem) || (re2.test(stem) && !(re3.test(stem)))) + w = stem; + } + re = /ll$/; + re2 = new RegExp(mgr1); + if (re.test(w) && re2.test(w)) { + re = /.$/; + w = w.replace(re,""); + } + + // and turn initial Y back to y + if (firstch == "y") + w = firstch.toLowerCase() + w.substr(1); + return w; + } +} + + + +/** + * Simple result scoring code. + */ +var Scorer = { + // Implement the following function to further tweak the score for each result + // The function takes a result array [filename, title, anchor, descr, score] + // and returns the new score. + /* + score: function(result) { + return result[4]; + }, + */ + + // query matches the full name of an object + objNameMatch: 11, + // or matches in the last dotted part of the object name + objPartialMatch: 6, + // Additive scores depending on the priority of the object + objPrio: {0: 15, // used to be importantResults + 1: 5, // used to be objectResults + 2: -5}, // used to be unimportantResults + // Used when the priority is not in the mapping. + objPrioDefault: 0, + + // query found in title + title: 15, + // query found in terms + term: 5 +}; + + +/** + * Search Module + */ +var Search = { + + _index : null, + _queued_query : null, + _pulse_status : -1, + + init : function() { + var params = $.getQueryParameters(); + if (params.q) { + var query = params.q[0]; + $('input[name="q"]')[0].value = query; + this.performSearch(query); + } + }, + + loadIndex : function(url) { + $.ajax({type: "GET", url: url, data: null, + dataType: "script", cache: true, + complete: function(jqxhr, textstatus) { + if (textstatus != "success") { + document.getElementById("searchindexloader").src = url; + } + }}); + }, + + setIndex : function(index) { + var q; + this._index = index; + if ((q = this._queued_query) !== null) { + this._queued_query = null; + Search.query(q); + } + }, + + hasIndex : function() { + return this._index !== null; + }, + + deferQuery : function(query) { + this._queued_query = query; + }, + + stopPulse : function() { + this._pulse_status = 0; + }, + + startPulse : function() { + if (this._pulse_status >= 0) + return; + function pulse() { + var i; + Search._pulse_status = (Search._pulse_status + 1) % 4; + var dotString = ''; + for (i = 0; i < Search._pulse_status; i++) + dotString += '.'; + Search.dots.text(dotString); + if (Search._pulse_status > -1) + window.setTimeout(pulse, 500); + } + pulse(); + }, + + /** + * perform a search for something (or wait until index is loaded) + */ + performSearch : function(query) { + // create the required interface elements + this.out = $('#search-results'); + this.title = $('

' + _('Searching') + '

').appendTo(this.out); + this.dots = $('').appendTo(this.title); + this.status = $('

').appendTo(this.out); + this.output = $('
'); + } + // Prettify the comment rating. + comment.pretty_rating = comment.rating + ' point' + + (comment.rating == 1 ? '' : 's'); + // Make a class (for displaying not yet moderated comments differently) + comment.css_class = comment.displayed ? '' : ' moderate'; + // Create a div for this comment. + var context = $.extend({}, opts, comment); + var div = $(renderTemplate(commentTemplate, context)); + + // If the user has voted on this comment, highlight the correct arrow. + if (comment.vote) { + var direction = (comment.vote == 1) ? 'u' : 'd'; + div.find('#' + direction + 'v' + comment.id).hide(); + div.find('#' + direction + 'u' + comment.id).show(); + } + + if (opts.moderator || comment.text != '[deleted]') { + div.find('a.reply').show(); + if (comment.proposal_diff) + div.find('#sp' + comment.id).show(); + if (opts.moderator && !comment.displayed) + div.find('#cm' + comment.id).show(); + if (opts.moderator || (opts.username == comment.username)) + div.find('#dc' + comment.id).show(); + } + return div; + } + + /** + * A simple template renderer. Placeholders such as <%id%> are replaced + * by context['id'] with items being escaped. Placeholders such as <#id#> + * are not escaped. + */ + function renderTemplate(template, context) { + var esc = $(document.createElement('div')); + + function handle(ph, escape) { + var cur = context; + $.each(ph.split('.'), function() { + cur = cur[this]; + }); + return escape ? esc.text(cur || "").html() : cur; + } + + return template.replace(/<([%#])([\w\.]*)\1>/g, function() { + return handle(arguments[2], arguments[1] == '%' ? true : false); + }); + } + + /** Flash an error message briefly. */ + function showError(message) { + $(document.createElement('div')).attr({'class': 'popup-error'}) + .append($(document.createElement('div')) + .attr({'class': 'error-message'}).text(message)) + .appendTo('body') + .fadeIn("slow") + .delay(2000) + .fadeOut("slow"); + } + + /** Add a link the user uses to open the comments popup. */ + $.fn.comment = function() { + return this.each(function() { + var id = $(this).attr('id').substring(1); + var count = COMMENT_METADATA[id]; + var title = count + ' comment' + (count == 1 ? '' : 's'); + var image = count > 0 ? opts.commentBrightImage : opts.commentImage; + var addcls = count == 0 ? ' nocomment' : ''; + $(this) + .append( + $(document.createElement('a')).attr({ + href: '#', + 'class': 'sphinx-comment-open' + addcls, + id: 'ao' + id + }) + .append($(document.createElement('img')).attr({ + src: image, + alt: 'comment', + title: title + })) + .click(function(event) { + event.preventDefault(); + show($(this).attr('id').substring(2)); + }) + ) + .append( + $(document.createElement('a')).attr({ + href: '#', + 'class': 'sphinx-comment-close hidden', + id: 'ah' + id + }) + .append($(document.createElement('img')).attr({ + src: opts.closeCommentImage, + alt: 'close', + title: 'close' + })) + .click(function(event) { + event.preventDefault(); + hide($(this).attr('id').substring(2)); + }) + ); + }); + }; + + var opts = { + processVoteURL: '/_process_vote', + addCommentURL: '/_add_comment', + getCommentsURL: '/_get_comments', + acceptCommentURL: '/_accept_comment', + deleteCommentURL: '/_delete_comment', + commentImage: '/static/_static/comment.png', + closeCommentImage: '/static/_static/comment-close.png', + loadingImage: '/static/_static/ajax-loader.gif', + commentBrightImage: '/static/_static/comment-bright.png', + upArrow: '/static/_static/up.png', + downArrow: '/static/_static/down.png', + upArrowPressed: '/static/_static/up-pressed.png', + downArrowPressed: '/static/_static/down-pressed.png', + voting: false, + moderator: false + }; + + if (typeof COMMENT_OPTIONS != "undefined") { + opts = jQuery.extend(opts, COMMENT_OPTIONS); + } + + var popupTemplate = '\ +
\ +

\ + Sort by:\ + best rated\ + newest\ + oldest\ +

\ +
Comments
\ +
\ + loading comments...
\ +
    \ +
    \ +

    Add a comment\ + (markup):

    \ +
    \ + reStructured text markup: *emph*, **strong**, \ + ``code``, \ + code blocks: :: and an indented block after blank line
    \ +
    \ + \ +

    \ + \ + Propose a change ▹\ + \ + \ + Propose a change ▿\ + \ +

    \ + \ + \ + \ + \ + \ +
    \ +
    '; + + var commentTemplate = '\ +
    \ +
    \ +
    \ + \ + \ + \ + \ + \ + \ +
    \ +
    \ + \ + \ + \ + \ + \ + \ +
    \ +
    \ +
    \ +

    \ + <%username%>\ + <%pretty_rating%>\ + <%time.delta%>\ +

    \ +
    <#text#>
    \ +

    \ + \ + reply ▿\ + proposal ▹\ + proposal ▿\ + \ + \ +

    \ +
    \
    +<#proposal_diff#>\
    +        
    \ +
      \ +
      \ +
      \ +
      \ + '; + + var replyTemplate = '\ +
    • \ +
      \ +
      \ + \ + \ + \ + \ + \ + \ +
      \ +
    • '; + + $(document).ready(function() { + init(); + }); +})(jQuery); + +$(document).ready(function() { + // add comment anchors for all paragraphs that are commentable + $('.sphinx-has-comment').comment(); + + // highlight search words in search results + $("div.context").each(function() { + var params = $.getQueryParameters(); + var terms = (params.q) ? params.q[0].split(/\s+/) : []; + var result = $(this); + $.each(terms, function() { + result.highlightText(this.toLowerCase(), 'highlighted'); + }); + }); + + // directly open comment window if requested + var anchor = document.location.hash; + if (anchor.substring(0, 9) == '#comment-') { + $('#ao' + anchor.substring(9)).click(); + document.location.hash = '#s' + anchor.substring(9); + } +}); diff --git a/python/altgraph/doc/_build/html/changelog.html b/python/altgraph/doc/_build/html/changelog.html new file mode 100644 index 000000000..8f0f459ea --- /dev/null +++ b/python/altgraph/doc/_build/html/changelog.html @@ -0,0 +1,271 @@ + + + + + + + + Release history — altgraph 0.11 documentation + + + + + + + + + + + + + + + +
      +
      +
      +
      + +
      +

      Release history

      +
      +

      0.11

      +
        +
      • Stabilize the order of elements in dot file exports, +patch from bitbucket user ‘pombredanne’.
      • +
      • Tweak setup.py file to remove dependency on distribute (but +keep the dependency on setuptools)
      • +
      +
      +
      +

      0.10.2

      +
        +
      • There where no classifiers in the package metadata due to a bug +in setup.py
      • +
      +
      +
      +

      0.10.1

      +

      This is a bugfix release

      +

      Bug fixes:

      +
        +
      • Issue #3: The source archive contains a README.txt +while the setup file refers to ReadMe.txt.

        +

        This is caused by a misfeature in distutils, as a +workaround I’ve renamed ReadMe.txt to README.txt +in the source tree and setup file.

        +
      • +
      +
      +
      +

      0.10

      +

      This is a minor feature release

      +

      Features:

      +
        +
      • Do not use “2to3” to support Python 3.

        +

        As a side effect of this altgraph now supports +Python 2.6 and later, and no longer supports +earlier releases of Python.

        +
      • +
      • The order of attributes in the Dot output +is now always alphabetical.

        +

        With this change the output will be consistent +between runs and Python versions.

        +
      • +
      +
      +
      +

      0.9

      +

      This is a minor bugfix release

      +

      Features:

      +
        +
      • Added altgraph.ObjectGraph.ObjectGraph.nodes, a method +yielding all nodes in an object graph.
      • +
      +

      Bugfixes:

      +
        +
      • The 0.8 release didn’t work with py2app when using +python 3.x.
      • +
      +
      +
      +

      0.8

      +

      This is a minor feature release. The major new feature +is a extensive set of unittests, which explains almost +all other changes in this release.

      +

      Bugfixes:

      +
        +
      • Installing failed with Python 2.5 due to using a distutils +class that isn’t available in that version of Python +(issue #1 on the issue tracker)
      • +
      • altgraph.GraphStat.degree_dist now actually works
      • +
      • altgraph.Graph.add_edge(a, b, create_nodes=False) will +no longer create the edge when one of the nodes doesn’t +exist.
      • +
      • altgraph.Graph.forw_topo_sort failed for some sparse graphs.
      • +
      • altgraph.Graph.back_topo_sort was completely broken in +previous releases.
      • +
      • altgraph.Graph.forw_bfs_subgraph now actually works.
      • +
      • altgraph.Graph.back_bfs_subgraph now actually works.
      • +
      • altgraph.Graph.iterdfs now returns the correct result +when the forward argument is False.
      • +
      • altgraph.Graph.iterdata now returns the correct result +when the forward argument is False.
      • +
      +

      Features:

      +
        +
      • The altgraph.Graph constructor now accepts an argument +that contains 2- and 3-tuples instead of requireing that +all items have the same size. The (optional) argument can now +also be any iterator.
      • +
      • altgraph.Graph.Graph.add_node has no effect when you +add a hidden node.
      • +
      • The private method altgraph.Graph._bfs is no longer +present.
      • +
      • The private method altgraph.Graph._dfs is no longer +present.
      • +
      • altgraph.ObjectGraph now has a __contains__ methods, +which means you can use the in operator to check if a +node is part of a graph.
      • +
      • altgraph.GraphUtil.generate_random_graph will raise +GraphError instead of looping forever when it is +impossible to create the requested graph.
      • +
      • altgraph.Dot.edge_style raises GraphError when +one of the nodes is not present in the graph. The method +silently added the tail in the past, but without ensuring +a consistent graph state.
      • +
      • altgraph.Dot.save_img now works when the mode is +"neato".
      • +
      +
      +
      +

      0.7.2

      +

      This is a minor bugfix release

      +

      Bugfixes:

      +
        +
      • distutils didn’t include the documentation subtree
      • +
      +
      +
      +

      0.7.1

      +

      This is a minor feature release

      +

      Features:

      +
        +
      • Documentation is now generated using sphinx +and can be viewed at <http://packages.python.org/altgraph>.
      • +
      • The repository has moved to bitbucket
      • +
      • altgraph.GraphStat.avg_hops is no longer present, the function had no +implementation and no specified behaviour.
      • +
      • the module altgraph.compat is gone, which means altgraph will no +longer work with Python 2.3.
      • +
      +
      +
      +

      0.7.0

      +

      This is a minor feature release.

      +

      Features:

      +
        +
      • Support for Python 3

        +
      • +
      • It is now possible to run tests using ‘python setup.py test’

        +

        (The actual testsuite is still very minimal though)

        +
      • +
      +
      +
      + + +
      +
      +
      +
      +
      +

      Table Of Contents

      + + +

      Previous topic

      +

      Altgraph - A basic graph library

      +

      Next topic

      +

      License

      + + +
      +
      +
      +
      + + + + \ No newline at end of file diff --git a/python/altgraph/doc/_build/html/core.html b/python/altgraph/doc/_build/html/core.html new file mode 100644 index 000000000..3d2ee1737 --- /dev/null +++ b/python/altgraph/doc/_build/html/core.html @@ -0,0 +1,130 @@ + + + + + + + + altgraph — A Python Graph Library — altgraph 0.11 documentation + + + + + + + + + + + + + + + +
      +
      +
      +
      + +
      +

      altgraph — A Python Graph Library

      +

      altgraph is a fork of graphlib tailored +to use newer Python 2.3+ features, including additional support used by the +py2app suite (modulegraph and macholib, specifically).

      +

      altgraph is a python based graph (network) representation and manipulation package. +It has started out as an extension to the graph_lib module +written by Nathan Denny it has been significantly optimized and expanded.

      +

      The altgraph.Graph.Graph class is loosely modeled after the LEDA +(Library of Efficient Datatypes) representation. The library +includes methods for constructing graphs, BFS and DFS traversals, +topological sort, finding connected components, shortest paths as well as a number +graph statistics functions. The library can also visualize graphs +via graphviz.

      +
      +
      +exception altgraph.GraphError
      +

      Exception raised when methods are called with bad values of +an inconsistent state.

      +
      + +
      + + +
      +
      +
      +
      +
      +

      Previous topic

      +

      License

      +

      Next topic

      +

      altgraph.Graph — Basic directional graphs

      + + +
      +
      +
      +
      + + + + \ No newline at end of file diff --git a/python/altgraph/doc/_build/html/dot.html b/python/altgraph/doc/_build/html/dot.html new file mode 100644 index 000000000..87fabc077 --- /dev/null +++ b/python/altgraph/doc/_build/html/dot.html @@ -0,0 +1,332 @@ + + + + + + + + altgraph.Dot — Interface to the dot language — altgraph 0.11 documentation + + + + + + + + + + + + + + +
      +
      +
      +
      + +
      +

      altgraph.Dot — Interface to the dot language

      +

      The Dot module provides a simple interface to the +file format used in the graphviz program. The module is intended to +offload the most tedious part of the process (the dot file generation) +while transparently exposing most of its features.

      +

      To display the graphs or to generate image files the graphviz +package needs to be installed on the system, moreover the dot and dotty programs must +be accesible in the program path so that they can be ran from processes spawned +within the module.

      +
      +

      Example usage

      +

      Here is a typical usage:

      +
      from altgraph import Graph, Dot
      +
      +# create a graph
      +edges = [ (1,2), (1,3), (3,4), (3,5), (4,5), (5,4) ]
      +graph = Graph.Graph(edges)
      +
      +# create a dot representation of the graph
      +dot = Dot.Dot(graph)
      +
      +# display the graph
      +dot.display()
      +
      +# save the dot representation into the mydot.dot file
      +dot.save_dot(file_name='mydot.dot')
      +
      +# save dot file as gif image into the graph.gif file
      +dot.save_img(file_name='graph', file_type='gif')
      +
      +
      +
      +
      +

      Directed graph and non-directed graph

      +

      Dot class can use for both directed graph and non-directed graph +by passing graphtype parameter.

      +

      Example:

      +
      # create directed graph(default)
      +dot = Dot.Dot(graph, graphtype="digraph")
      +
      +# create non-directed graph
      +dot = Dot.Dot(graph, graphtype="graph")
      +
      +
      +
      +
      +

      Customizing the output

      +

      The graph drawing process may be customized by passing +valid dot parameters for the nodes and edges. For a list of all +parameters see the graphviz documentation.

      +

      Example:

      +
      # customizing the way the overall graph is drawn
      +dot.style(size='10,10', rankdir='RL', page='5, 5' , ranksep=0.75)
      +
      +# customizing node drawing
      +dot.node_style(1, label='BASE_NODE',shape='box', color='blue' )
      +dot.node_style(2, style='filled', fillcolor='red')
      +
      +# customizing edge drawing
      +dot.edge_style(1, 2, style='dotted')
      +dot.edge_style(3, 5, arrowhead='dot', label='binds', labelangle='90')
      +dot.edge_style(4, 5, arrowsize=2, style='bold')
      +
      +
      +.. note::
      +
      +   dotty (invoked via :py:func:`~altgraph.Dot.display`) may not be able to
      +   display all graphics styles. To verify the output save it to an image
      +   file and look at it that way.
      +
      +
      +
      +
      +

      Valid attributes

      +
        +
      • dot styles, passed via the Dot.style() method:

        +
        rankdir = 'LR'   (draws the graph horizontally, left to right)
        +ranksep = number (rank separation in inches)
        +
        +
        +
      • +
      • node attributes, passed via the Dot.node_style() method:

        +
        style = 'filled' | 'invisible' | 'diagonals' | 'rounded'
        +shape = 'box' | 'ellipse' | 'circle' | 'point' | 'triangle'
        +
        +
        +
      • +
      • edge attributes, passed via the Dot.edge_style() method:

        +
        style     = 'dashed' | 'dotted' | 'solid' | 'invis' | 'bold'
        +arrowhead = 'box' | 'crow' | 'diamond' | 'dot' | 'inv' | 'none' | 'tee' | 'vee'
        +weight    = number (the larger the number the closer the nodes will be)
        +
        +
        +
      • +
      • valid graphviz colors

        +
      • +
      • for more details on how to control the graph drawing process see the +graphviz reference.

        +
      • +
      +
      +
      +

      Class interface

      +
      +
      +class altgraph.Dot.Dot(graph[, nodes[, edgefn[, nodevisitor[, edgevisitor[, name[, dot[, dotty[, neato[, graphtype]]]]]]]]])
      +

      Creates a new Dot generator based on the specified +Graph. The Dot generator won’t reference +the graph once it is constructed.

      +

      If the nodes argument is present it is the list of nodes to include +in the graph, otherwise all nodes in graph are included.

      +

      If the edgefn argument is present it is a function that yields the +nodes connected to another node, this defaults to +graph.out_nbr. The constructor won’t +add edges to the dot file unless both the head and tail of the edge +are in nodes.

      +

      If the name is present it specifies the name of the graph in the resulting +dot file. The default is "G".

      +

      The functions nodevisitor and edgevisitor return the default style +for a given edge or node (both default to functions that return an empty +style).

      +

      The arguments dot, dotty and neato are used to pass the path to +the corresponding graphviz command.

      +
      + +
      +

      Updating graph attributes

      +
      +
      +Dot.style(**attr)
      +

      Sets the overall style (graph attributes) to the given attributes.

      +

      See Valid Attributes for more information about the attributes.

      +
      + +
      +
      +Dot.node_style(node, **attr)
      +

      Sets the style for node to the given attributes.

      +

      This method will add node to the graph when it isn’t already +present.

      +

      See Valid Attributes for more information about the attributes.

      +
      + +
      +
      +Dot.all_node_style(**attr)
      +

      Replaces the current style for all nodes

      +
      + +
      +
      +altgraph.Dot.edge_style(head, tail, **attr)
      +

      Sets the style of an edge to the given attributes. The edge will +be added to the graph when it isn’t already present, but head +and tail must both be valid nodes.

      +

      See Valid Attributes for more information about the attributes.

      +
      + +
      +
      +

      Emitting output

      +
      +
      +Dot.display([mode])
      +

      Displays the current graph via dotty.

      +

      If the mode is "neato" the dot file is processed with +the neato command before displaying.

      +

      This method won’t return until the dotty command exits.

      +
      + +
      +
      +altgraph.Dot.save_dot(filename)
      +

      Saves the current graph representation into the given file.

      +
      +

      Note

      +

      For backward compatibility reasons this method can also +be called without an argument, it will then write the graph +into a fixed filename (present in the attribute Graph.temp_dot).

      +

      This feature is deprecated and should not be used.

      +
      +
      + +
      +
      +altgraph.Dot.save_image(file_name[, file_type[, mode]])
      +

      Saves the current graph representation as an image file. The output +is written into a file whose basename is file_name and whose suffix +is file_type.

      +

      The file_type specifies the type of file to write, the default +is "gif".

      +

      If the mode is "neato" the dot file is processed with +the neato command before displaying.

      +
      +

      Note

      +

      For backward compatibility reasons this method can also +be called without an argument, it will then write the graph +with a fixed basename ("out").

      +

      This feature is deprecated and should not be used.

      +
      +
      + +
      +
      +altgraph.Dot.iterdot()
      +

      Yields all lines of a graphviz input file (including line endings).

      +
      + +
      +
      +altgraph.Dot.__iter__()
      +

      Alias for the iterdot() method.

      +
      + +
      +
      +
      + + +
      +
      +
      +
      +
      +

      Table Of Contents

      + + +

      Previous topic

      +

      altgraph.GraphUtil — Utility functions

      + + +
      +
      +
      +
      + + + + \ No newline at end of file diff --git a/python/altgraph/doc/_build/html/genindex.html b/python/altgraph/doc/_build/html/genindex.html new file mode 100644 index 000000000..16977c712 --- /dev/null +++ b/python/altgraph/doc/_build/html/genindex.html @@ -0,0 +1,604 @@ + + + + + + + + + Index — altgraph 0.11 documentation + + + + + + + + + + + + + +
      +
      +
      +
      + + +

      Index

      + +
      + _ + | A + | B + | C + | D + | E + | F + | G + | H + | I + | M + | N + | O + | R + | S + | T + +
      +

      _

      +
      + + +
      + +
      __contains__() (altgraph.Graph.Graph method) +
      + +
      + +
      (altgraph.ObjectGraph.ObjectGraph method) +
      + +
      +
      + +
      __iter__() (altgraph.Graph.Graph method) +
      + +
      + +
      (in module altgraph.Dot) +
      + +
      +
      + +

      A

      + + + +
      + +
      add_edge() (altgraph.Graph.Graph method) +
      + + +
      add_node() (altgraph.Graph.Graph method) +
      + + +
      addNode() (altgraph.ObjectGraph.ObjectGraph method) +
      + + +
      all_degree() (altgraph.Graph.Graph method) +
      + + +
      all_edges() (altgraph.Graph.Graph method) +
      + + +
      all_nbrs() (altgraph.Graph.Graph method) +
      + + +
      all_node_style() (altgraph.Dot.Dot method) +
      + +
      + +
      altgraph (module) +
      + + +
      altgraph.Dot (module) +
      + + +
      altgraph.Graph (module) +
      + + +
      altgraph.GraphAlgo (module) +
      + + +
      altgraph.GraphStat (module) +
      + + +
      altgraph.GraphUtil (module) +
      + + +
      altgraph.ObjectGraph (module) +
      + +
      + +

      B

      + + + +
      + +
      back_bfs() (altgraph.Graph.Graph method) +
      + + +
      back_bfs_subgraph() (altgraph.Graph.Graph method) +
      + +
      + +
      back_topo_sort() (altgraph.Graph.Graph method) +
      + +
      + +

      C

      + + + +
      + +
      clust_coef() (altgraph.Graph.Graph method) +
      + + +
      connected() (altgraph.Graph.Graph method) +
      + +
      + +
      createNode() (altgraph.ObjectGraph.ObjectGraph method) +
      + + +
      createReferences() (altgraph.ObjectGraph.ObjectGraph method) +
      + +
      + +

      D

      + + + +
      + +
      degree_dist() (in module altgraph.GraphStat) +
      + + +
      describe_edge() (altgraph.Graph.Graph method) +
      + + +
      describe_node() (altgraph.Graph.Graph method) +
      + +
      + +
      dijkstra() (in module altgraph.GraphAlgo) +
      + + +
      display() (altgraph.Dot.Dot method) +
      + + +
      Dot (class in altgraph.Dot) +
      + +
      + +

      E

      + + + +
      + +
      edge_by_id() (altgraph.Graph.Graph method) +
      + + +
      edge_by_node() (altgraph.Graph.Graph method) +
      + + +
      edge_data() (altgraph.Graph.Graph method) +
      + +
      + +
      edge_list() (altgraph.Graph.Graph method) +
      + + +
      edge_style() (in module altgraph.Dot) +
      + +
      + +

      F

      + + + +
      + +
      filter_stack() (in module altgraph.GraphUtil) +
      + + +
      filterStack() (altgraph.ObjectGraph.ObjectGraph method) +
      + + +
      findNode() (altgraph.ObjectGraph.ObjectGraph method) +
      + + +
      flatten() (altgraph.ObjectGraph.ObjectGraph method) +
      + +
      + +
      forw_bfs() (altgraph.Graph.Graph method) +
      + + +
      forw_bfs_subgraph() (altgraph.Graph.Graph method) +
      + + +
      forw_topo_sort() (altgraph.Graph.Graph method) +
      + +
      + +

      G

      + + + +
      + +
      generate_random_graph() (in module altgraph.GraphUtil) +
      + + +
      generate_scale_free_graph() (in module altgraph.GraphUtil) +
      + + +
      get_edges() (altgraph.ObjectGraph.ObjectGraph method) +
      + + +
      get_hops() (altgraph.Graph.Graph method) +
      + +
      + +
      getIdent() (in module altgraph.ObjectGraph) +
      + + +
      getRawIdent() (altgraph.ObjectGraph.ObjectGraph method) +
      + + +
      Graph (class in altgraph.Graph) +
      + + +
      GraphError +
      + +
      + +

      H

      + + + +
      + +
      head() (altgraph.Graph.Graph method) +
      + + +
      hidden_edge_list() (altgraph.Graph.Graph method) +
      + + +
      hidden_node_list() (altgraph.Graph.Graph method) +
      + +
      + +
      hide_edge() (altgraph.Graph.Graph method) +
      + + +
      hide_node() (altgraph.Graph.Graph method) +
      + +
      + +

      I

      + + + +
      + +
      inc_degree() (altgraph.Graph.Graph method) +
      + + +
      inc_edges() (altgraph.Graph.Graph method) +
      + + +
      inc_nbrs() (altgraph.Graph.Graph method) +
      + +
      + +
      iterdata() (altgraph.Graph.Graph method) +
      + + +
      iterdfs() (altgraph.Graph.Graph method) +
      + + +
      iterdot() (in module altgraph.Dot) +
      + +
      + +

      M

      + + + +
      + +
      msg() (altgraph.ObjectGraph.ObjectGraph method) +
      + + +
      msgin() (altgraph.ObjectGraph.ObjectGraph method) +
      + +
      + +
      msgout() (altgraph.ObjectGraph.ObjectGraph method) +
      + +
      + +

      N

      + + + +
      + +
      node_data() (in module altgraph.Graph) +
      + + +
      node_list() (altgraph.Graph.Graph method) +
      + + +
      node_style() (altgraph.Dot.Dot method) +
      + + +
      nodes() (altgraph.ObjectGraph.ObjectGraph method) +
      + +
      + +
      number_of_edges() (altgraph.Graph.Graph method) +
      + + +
      number_of_hidden_edges() (altgraph.Graph.Graph method) +
      + + +
      number_of_hidden_nodes() (altgraph.Graph.Graph method) +
      + + +
      number_of_nodes() (altgraph.Graph.Graph method) +
      + +
      + +

      O

      + + + +
      + +
      ObjectGraph (class in altgraph.ObjectGraph) +
      + + +
      ObjectGraph.debug (in module altgraph.ObjectGraph) +
      + + +
      ObjectGraph.graph (in module altgraph.ObjectGraph) +
      + +
      + +
      out_degree() (altgraph.Graph.Graph method) +
      + + +
      out_edges() (altgraph.Graph.Graph method) +
      + + +
      out_nbrs() (altgraph.Graph.Graph method) +
      + +
      + +

      R

      + + + +
      + +
      removeNode() (altgraph.ObjectGraph.ObjectGraph method) +
      + + +
      removeReference() (in module altgraph.ObjectGraph) +
      + + +
      restore_all_edges() (altgraph.Graph.Graph method) +
      + +
      + +
      restore_all_nodes() (altgraph.Graph.Graph method) +
      + + +
      restore_edge() (altgraph.Graph.Graph method) +
      + + +
      restore_node() (altgraph.Graph.Graph method) +
      + +
      + +

      S

      + + + +
      + +
      save_dot() (in module altgraph.Dot) +
      + + +
      save_image() (in module altgraph.Dot) +
      + +
      + +
      shortest_path() (in module altgraph.GraphAlgo) +
      + + +
      style() (altgraph.Dot.Dot method) +
      + +
      + +

      T

      + + +
      + +
      tail() (altgraph.Graph.Graph method) +
      + +
      + + + + + + +
      +
      + + + + + +
      +
      +
      + + + + + \ No newline at end of file diff --git a/python/altgraph/doc/_build/html/graph.html b/python/altgraph/doc/_build/html/graph.html new file mode 100644 index 000000000..72dd1cdef --- /dev/null +++ b/python/altgraph/doc/_build/html/graph.html @@ -0,0 +1,491 @@ + + + + + + + + altgraph.Graph — Basic directional graphs — altgraph 0.11 documentation + + + + + + + + + + + + + + + +
      +
      +
      +
      + +
      +

      altgraph.Graph — Basic directional graphs

      +

      The module altgraph.Graph provides a class Graph that +represents a directed graph with N nodes and E edges.

      +
      +
      +class altgraph.Graph.Graph([edges])
      +

      Constructs a new empty Graph object. If the optional +edges parameter is supplied, updates the graph by adding the +specified edges.

      +

      All of the elements in edges should be tuples with two or three +elements. The first two elements of the tuple are the source and +destination node of the edge, the optional third element is the +edge data. The source and destination nodes are added to the graph +when the aren’t already present.

      +
      + + + +
      +

      Graph traversal

      +
      +
      +Graph.out_nbrs(node)
      +

      Return a list of all nodes connected by outgoing edges.

      +
      + +
      +
      +Graph.inc_nbrs(node)
      +

      Return a list of all nodes connected by incoming edges.

      +
      + +
      +
      +Graph.all_nbrs(node)
      +

      Returns a list of nodes connected by an incoming or outgoing edge.

      +
      + +
      +
      +Graph.forw_topo_sort()
      +

      Return a list of nodes where the successors (based on outgoing +edges) of any given node apear in the sequence after that node.

      +
      + +
      +
      +Graph.back_topo_sort()
      +

      Return a list of nodes where the successors (based on incoming +edges) of any given node apear in the sequence after that node.

      +
      + +
      +
      +Graph.forw_bfs_subgraph(start_id)
      +

      Return a subgraph consisting of the breadth first +reachable nodes from start_id based on their outgoing edges.

      +
      + +
      +
      +Graph.back_bfs_subgraph(start_id)
      +

      Return a subgraph consisting of the breadth first +reachable nodes from start_id based on their incoming edges.

      +
      + +
      +
      +Graph.iterdfs(start[, end[, forward]])
      +

      Yield nodes in a depth first traversal starting at the start +node.

      +

      If end is specified traversal stops when reaching that node.

      +

      If forward is True (the default) edges are traversed in forward +direction, otherwise they are traversed in reverse direction.

      +
      + +
      +
      +Graph.iterdata(start[, end[, forward[, condition]]])
      +

      Yield the associated data for nodes in a depth first traversal +starting at the start node. This method will not yield values for nodes +without associated data.

      +

      If end is specified traversal stops when reaching that node.

      +

      If condition is specified and the condition callable returns +False for the associated data this method will not yield the +associated data and will not follow the edges for the node.

      +

      If forward is True (the default) edges are traversed in forward +direction, otherwise they are traversed in reverse direction.

      +
      + +
      +
      +Graph.forw_bfs(start[, end])
      +

      Returns a list of nodes starting at start in some bread first +search order (following outgoing edges).

      +

      When end is specified iteration stops at that node.

      +
      + +
      +
      +Graph.back_bfs(start[, end])
      +

      Returns a list of nodes starting at start in some bread first +search order (following incoming edges).

      +

      When end is specified iteration stops at that node.

      +
      + +
      +
      +Graph.get_hops(start[, end[, forward]])
      +

      Computes the hop distance to all nodes centered around a specified node.

      +

      First order neighbours are at hop 1, their neigbours are at hop 2 etc. +Uses forw_bfs() or back_bfs() depending on the value of +the forward parameter.

      +

      If the distance between all neighbouring nodes is 1 the hop number +corresponds to the shortest distance between the nodes.

      +

      Typical usage:

      +
      >>> print graph.get_hops(1, 8)
      +>>> [(1, 0), (2, 1), (3, 1), (4, 2), (5, 3), (7, 4), (8, 5)]
      +# node 1 is at 0 hops
      +# node 2 is at 1 hop
      +# ...
      +# node 8 is at 5 hops
      +
      +
      +
      + +
      +
      +

      Graph statistics

      +
      +
      +Graph.connected()
      +

      Returns True iff every node in the graph can be reached from +every other node.

      +
      + +
      +
      +Graph.clust_coef(node)
      +

      Returns the local clustering coefficient of node.

      +

      The local cluster coefficient is the proportion of the actual number +of edges between neighbours of node and the maximum number of +edges between those nodes.

      +
      + +
      +
      + + +
      +
      +
      +
      +
      +

      Table Of Contents

      + + +

      Previous topic

      +

      altgraph — A Python Graph Library

      +

      Next topic

      +

      altgraph.ObjectGraph — Graphs of objecs with an identifier

      + + +
      +
      +
      +
      + + + + \ No newline at end of file diff --git a/python/altgraph/doc/_build/html/graphalgo.html b/python/altgraph/doc/_build/html/graphalgo.html new file mode 100644 index 000000000..07800d977 --- /dev/null +++ b/python/altgraph/doc/_build/html/graphalgo.html @@ -0,0 +1,134 @@ + + + + + + + + altgraph.GraphAlgo — Graph algorithms — altgraph 0.11 documentation + + + + + + + + + + + + + + + +
      +
      +
      +
      + +
      +

      altgraph.GraphAlgo — Graph algorithms

      +
      +
      +altgraph.GraphAlgo.dijkstra(graph, start[, end])
      +

      Dijkstra’s algorithm for shortest paths.

      +

      Find shortest paths from the start node to all nodes nearer +than or equal to the end node. The edge data is assumed to be the edge length.

      +
      +

      Note

      +

      Dijkstra’s algorithm is only guaranteed to work correctly when all edge lengths are positive. +This code does not verify this property for all edges (only the edges examined until the end +vertex is reached), but will correctly compute shortest paths even for some graphs with negative +edges, and will raise an exception if it discovers that a negative edge has caused it to make a mistake.

      +
      +
      + +
      +
      +altgraph.GraphAlgo.shortest_path(graph, start, end)
      +

      Find a single shortest path from the given start node to the given end node. +The input has the same conventions as dijkstra(). The output is a list +of the nodes in order along the shortest path.

      +
      + +
      + + +
      +
      +
      +
      +
      +

      Previous topic

      +

      altgraph.ObjectGraph — Graphs of objecs with an identifier

      +

      Next topic

      +

      altgraph.GraphStat — Functions providing various graph statistics

      + + +
      +
      +
      +
      + + + + \ No newline at end of file diff --git a/python/altgraph/doc/_build/html/graphstat.html b/python/altgraph/doc/_build/html/graphstat.html new file mode 100644 index 000000000..49a89bf51 --- /dev/null +++ b/python/altgraph/doc/_build/html/graphstat.html @@ -0,0 +1,130 @@ + + + + + + + + altgraph.GraphStat — Functions providing various graph statistics — altgraph 0.11 documentation + + + + + + + + + + + + + + + +
      +
      +
      +
      + +
      +

      altgraph.GraphStat — Functions providing various graph statistics

      +

      The module altgraph.GraphStat provides function that calculate +graph statistics. Currently there is only one such function, more may +be added later.

      +
      +
      +altgraph.GraphStat.degree_dist(graph[, limits[, bin_num[, mode]]])
      +

      Groups the number of edges per node into bin_num bins +and returns the list of those bins. Every item in the result +is a tuple with the center of the bin and the number of items +in that bin.

      +

      When the limits argument is present it must be a tuple with +the mininum and maximum number of edges that get binned (that +is, when limits is (4, 10) only nodes with between 4 +and 10 edges get counted.

      +

      The mode argument is used to count incoming ('inc') or +outgoing ('out') edges. The default is to count the outgoing +edges.

      +
      + +
      + + +
      +
      +
      +
      +
      +

      Previous topic

      +

      altgraph.GraphAlgo — Graph algorithms

      +

      Next topic

      +

      altgraph.GraphUtil — Utility functions

      + + +
      +
      +
      +
      + + + + \ No newline at end of file diff --git a/python/altgraph/doc/_build/html/graphutil.html b/python/altgraph/doc/_build/html/graphutil.html new file mode 100644 index 000000000..774efcfdf --- /dev/null +++ b/python/altgraph/doc/_build/html/graphutil.html @@ -0,0 +1,162 @@ + + + + + + + + altgraph.GraphUtil — Utility functions — altgraph 0.11 documentation + + + + + + + + + + + + + + + +
      +
      +
      +
      + +
      +

      altgraph.GraphUtil — Utility functions

      +

      The module altgraph.GraphUtil performs a number of more +or less useful utility functions.

      +
      +
      +altgraph.GraphUtil.generate_random_graph(node_num, edge_num[, self_loops[, multi_edges])
      +

      Generates and returns a Graph instance +with node_num nodes randomly connected by edge_num edges.

      +

      When self_loops is present and True there can be edges that point from +a node to itself.

      +

      When multi_edge is present and True there can be duplicate edges.

      +

      This method raises GraphError <altgraph.GraphError when +a graph with the requested configuration cannot be created.

      +
      + +
      +
      +altgraph.GraphUtil.generate_scale_free_graph(steps, growth_num[, self_loops[, multi_edges]])
      +

      Generates and returns a Graph instance that +will have steps*growth_n um nodes and a scale free (powerlaw) +connectivity.

      +

      Starting with a fully connected graph with growth_num nodes +at every step growth_num nodes are added to the graph and are connected +to existing nodes with a probability proportional to the degree of these +existing nodes.

      +
      +

      Warning

      +

      The current implementation is basically untested, although +code inspection seems to indicate an implementation that is consistent +with the description at +Wolfram MathWorld

      +
      +
      + +
      +
      +altgraph.GraphUtil.filter_stack(graph, head, filters)
      +

      Perform a depth-first oder walk of the graph starting at head and +apply all filter functions in filters on the node data of the nodes +found.

      +

      Returns (visited, removes, orphans), where

      +
        +
      • visited: the set of visited nodes
      • +
      • removes: the list of nodes where the node data doesn’t match +all filters.
      • +
      • orphans: list of tuples (last_good, node), where +node is not in removes and one of the nodes that is connected +by an incoming edge is in removes. Last_good is the +closest upstream node that is not in removes.
      • +
      +
      + +
      + + +
      +
      +
      +
      +
      +

      Previous topic

      +

      altgraph.GraphStat — Functions providing various graph statistics

      +

      Next topic

      +

      altgraph.Dot — Interface to the dot language

      + + +
      +
      +
      +
      + + + + \ No newline at end of file diff --git a/python/altgraph/doc/_build/html/index.html b/python/altgraph/doc/_build/html/index.html new file mode 100644 index 000000000..83c8c9a25 --- /dev/null +++ b/python/altgraph/doc/_build/html/index.html @@ -0,0 +1,142 @@ + + + + + + + + Altgraph - A basic graph library — altgraph 0.11 documentation + + + + + + + + + + + + + + +
      +
      +
      +
      + +
      +

      Altgraph - A basic graph library

      +

      altgraph is a fork of graphlib: a graph (network) package for constructing +graphs, BFS and DFS traversals, topological sort, shortest paths, etc. with +graphviz output.

      +

      The primary users of this package are macholib and modulegraph.

      + + +
      +

      Indices and tables

      + +
      +
      + + +
      +
      +
      +
      +
      +

      Table Of Contents

      + + +

      Next topic

      +

      Release history

      + + +
      +
      +
      +
      + + + + \ No newline at end of file diff --git a/python/altgraph/doc/_build/html/license.html b/python/altgraph/doc/_build/html/license.html new file mode 100644 index 000000000..546f6e66a --- /dev/null +++ b/python/altgraph/doc/_build/html/license.html @@ -0,0 +1,136 @@ + + + + + + + + License — altgraph 0.11 documentation + + + + + + + + + + + + + + + +
      +
      +
      +
      + +
      +

      License

      +

      Copyright (c) 2004 Istvan Albert unless otherwise noted.

      +

      Parts are copyright (c) Bob Ippolito

      +

      Parts are copyright (c) 2010-2014 Ronald Oussoren

      +
      +

      MIT License

      +

      Permission is hereby granted, free of charge, to any person obtaining a copy of this software +and associated documentation files (the “Software”), to deal in the Software without restriction, +including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, +and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do +so.

      +

      THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, +INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR +PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE +FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, +ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN +THE SOFTWARE.

      +
      +
      + + +
      +
      +
      +
      +
      +

      Table Of Contents

      + + +

      Previous topic

      +

      Release history

      +

      Next topic

      +

      altgraph — A Python Graph Library

      + + +
      +
      +
      +
      + + + + \ No newline at end of file diff --git a/python/altgraph/doc/_build/html/objectgraph.html b/python/altgraph/doc/_build/html/objectgraph.html new file mode 100644 index 000000000..c9879f656 --- /dev/null +++ b/python/altgraph/doc/_build/html/objectgraph.html @@ -0,0 +1,283 @@ + + + + + + + + altgraph.ObjectGraph — Graphs of objecs with an identifier — altgraph 0.11 documentation + + + + + + + + + + + + + + + +
      +
      +
      +
      + +
      +

      altgraph.ObjectGraph — Graphs of objecs with an identifier

      +
      +
      +class altgraph.ObjectGraph.ObjectGraph([graph[, debug]])
      +

      A graph of objects that have a “graphident” attribute. The +value of this attribute is the key for the object in the +graph.

      +

      The optional graph is a previously constructed +Graph.

      +

      The optional debug level controls the amount of debug output +(see msg(), msgin() and msgout()).

      +
      +

      Note

      +

      the altgraph library does not generate output, the +debug attribute and message methods are present for use +by subclasses.

      +
      +
      + +
      +
      +ObjectGraph.graph
      +

      An Graph object that contains +the graph data.

      +
      + +
      +
      +ObjectGraph.addNode(node)
      +

      Adds a node to the graph.

      +
      +

      Note

      +

      re-adding a node that was previously removed +using removeNode() will reinstate the previously +removed node.

      +
      +
      + +
      +
      +ObjectGraph.createNode(self, cls, name, *args, **kwds)
      +

      Creates a new node using cls(*args, **kwds) and adds that +node using addNode().

      +

      Returns the newly created node.

      +
      + +
      +
      +ObjectGraph.removeNode(node)
      +

      Removes a node from the graph when it exists. The node argument +is either a node object, or the graphident of a node.

      +
      + +
      +
      +ObjectGraph.createReferences(fromnode, tonode[, edge_data])
      +

      Creates a reference from fromnode to tonode. The optional +edge_data is associated with the edge.

      +

      Fromnode and tonode can either be node objects or the graphident +values for nodes.

      +
      + +
      +
      +altgraph.ObjectGraph.removeReference(fromnode, tonode)
      +

      Removes the reference from fromnode to tonode if it exists.

      +
      + +
      +
      +ObjectGraph.getRawIdent(node)
      +

      Returns the graphident attribute of node, or the graph itself +when node is None.

      +
      + +
      +
      +altgraph.ObjectGraph.getIdent(node)
      +

      Same as getRawIdent(), but only if the node is part +of the graph.

      +

      Node can either be an actual node object or the graphident of +a node.

      +
      + +
      +
      +ObjectGraph.findNode(node)
      +

      Returns a given node in the graph, or Node when it cannot +be found.

      +

      Node is either an object with a graphident attribute or +the graphident attribute itself.

      +
      + +
      +
      +ObjectGraph.__contains__(node)
      +

      Returns True if node is a member of the graph. Node is either an +object with a graphident attribute or the graphident attribute itself.

      +
      + +
      +
      +ObjectGraph.flatten([condition[, start]])
      +

      Yield all nodes that are entirely reachable by condition +starting fromt he given start node or the graph root.

      +
      +

      Note

      +

      objects are only reachable from the graph root +when there is a reference from the root to the node +(either directly or through another node)

      +
      +
      + +
      +
      +ObjectGraph.nodes()
      +

      Yield all nodes in the graph.

      +
      + +
      +
      +ObjectGraph.get_edges(node)
      +

      Returns two iterators that yield the nodes reaching by +outgoing and incoming edges.

      +
      + +
      +
      +ObjectGraph.filterStack(filters)
      +

      Filter the ObjectGraph in-place by removing all edges to nodes that +do not match every filter in the given filter list

      +

      Returns a tuple containing the number of: +(nodes_visited, nodes_removed, nodes_orphaned)

      +
      + +
      +

      Debug output

      +
      +
      +ObjectGraph.debug
      +

      The current debug level.

      +
      + +
      +
      +ObjectGraph.msg(level, text, *args)
      +

      Print a debug message at the current indentation level when the current +debug level is level or less.

      +
      + +
      +
      +ObjectGraph.msgin(level, text, *args)
      +

      Print a debug message when the current debug level is level or less, +and increase the indentation level.

      +
      + +
      +
      +ObjectGraph.msgout(level, text, *args)
      +

      Decrease the indentation level and print a debug message when the +current debug level is level or less.

      +
      + +
      +
      + + +
      +
      +
      +
      +
      +

      Table Of Contents

      + + +

      Previous topic

      +

      altgraph.Graph — Basic directional graphs

      +

      Next topic

      +

      altgraph.GraphAlgo — Graph algorithms

      + + +
      +
      +
      +
      + + + + \ No newline at end of file diff --git a/python/altgraph/doc/_build/html/objects.inv b/python/altgraph/doc/_build/html/objects.inv new file mode 100644 index 000000000..7c8a150fb Binary files /dev/null and b/python/altgraph/doc/_build/html/objects.inv differ diff --git a/python/altgraph/doc/_build/html/py-modindex.html b/python/altgraph/doc/_build/html/py-modindex.html new file mode 100644 index 000000000..dd60a9b2c --- /dev/null +++ b/python/altgraph/doc/_build/html/py-modindex.html @@ -0,0 +1,139 @@ + + + + + + + + Python Module Index — altgraph 0.11 documentation + + + + + + + + + + + + + + + + +
      +
      +
      +
      + + +

      Python Module Index

      + +
      + a +
      + + + + + + + + + + + + + + + + + + + + + + + + + +
       
      + a
      + altgraph + A directional graph for python
          + altgraph.Dot + Interface to the dot language as used by Graphviz..
          + altgraph.Graph + Basic directional graphs.
          + altgraph.GraphAlgo + Basic graphs algoritms
          + altgraph.GraphStat + Functions providing various graph statistics
          + altgraph.GraphUtil + Utility functions
          + altgraph.ObjectGraph + A graph of objects that have a "graphident" attribute.
      + + +
      +
      +
      +
      +
      + + +
      +
      +
      +
      + + + + \ No newline at end of file diff --git a/python/altgraph/doc/_build/html/search.html b/python/altgraph/doc/_build/html/search.html new file mode 100644 index 000000000..93acf8dc5 --- /dev/null +++ b/python/altgraph/doc/_build/html/search.html @@ -0,0 +1,105 @@ + + + + + + + + Search — altgraph 0.11 documentation + + + + + + + + + + + + + + + + + + + +
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      + + + + \ No newline at end of file diff --git a/python/altgraph/doc/_build/html/searchindex.js b/python/altgraph/doc/_build/html/searchindex.js new file mode 100644 index 000000000..972760abe --- /dev/null +++ b/python/altgraph/doc/_build/html/searchindex.js @@ -0,0 +1 @@ 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