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author | Matt A. Tobin <mattatobin@localhost.localdomain> | 2018-02-02 04:16:08 -0500 |
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committer | Matt A. Tobin <mattatobin@localhost.localdomain> | 2018-02-02 04:16:08 -0500 |
commit | 5f8de423f190bbb79a62f804151bc24824fa32d8 (patch) | |
tree | 10027f336435511475e392454359edea8e25895d /python/altgraph/altgraph_tests | |
parent | 49ee0794b5d912db1f95dce6eb52d781dc210db5 (diff) | |
download | UXP-5f8de423f190bbb79a62f804151bc24824fa32d8.tar UXP-5f8de423f190bbb79a62f804151bc24824fa32d8.tar.gz UXP-5f8de423f190bbb79a62f804151bc24824fa32d8.tar.lz UXP-5f8de423f190bbb79a62f804151bc24824fa32d8.tar.xz UXP-5f8de423f190bbb79a62f804151bc24824fa32d8.zip |
Add m-esr52 at 52.6.0
Diffstat (limited to 'python/altgraph/altgraph_tests')
-rw-r--r-- | python/altgraph/altgraph_tests/__init__.py | 1 | ||||
-rw-r--r-- | python/altgraph/altgraph_tests/test_altgraph.py | 45 | ||||
-rw-r--r-- | python/altgraph/altgraph_tests/test_dot.py | 370 | ||||
-rw-r--r-- | python/altgraph/altgraph_tests/test_graph.py | 644 | ||||
-rw-r--r-- | python/altgraph/altgraph_tests/test_graphstat.py | 70 | ||||
-rw-r--r-- | python/altgraph/altgraph_tests/test_graphutil.py | 140 | ||||
-rw-r--r-- | python/altgraph/altgraph_tests/test_object_graph.py | 349 |
7 files changed, 1619 insertions, 0 deletions
diff --git a/python/altgraph/altgraph_tests/__init__.py b/python/altgraph/altgraph_tests/__init__.py new file mode 100644 index 000000000..6890389df --- /dev/null +++ b/python/altgraph/altgraph_tests/__init__.py @@ -0,0 +1 @@ +""" altgraph tests """ diff --git a/python/altgraph/altgraph_tests/test_altgraph.py b/python/altgraph/altgraph_tests/test_altgraph.py new file mode 100644 index 000000000..2ca6b251e --- /dev/null +++ b/python/altgraph/altgraph_tests/test_altgraph.py @@ -0,0 +1,45 @@ +#!/usr/bin/env py.test +import os +import sys + +from altgraph import Graph, GraphAlgo +import unittest + +class BasicTests (unittest.TestCase): + def setUp(self): + self.edges = [ + (1,2), (2,4), (1,3), (2,4), (3,4), (4,5), (6,5), (6,14), (14,15), + (6, 15), (5,7), (7, 8), (7,13), (12,8), (8,13), (11,12), (11,9), + (13,11), (9,13), (13,10) + ] + + # these are the edges + self.store = {} + self.g = Graph.Graph() + for head, tail in self.edges: + self.store[head] = self.store[tail] = None + self.g.add_edge(head, tail) + + def test_num_edges(self): + # check the parameters + self.assertEqual(self.g.number_of_nodes(), len(self.store)) + self.assertEqual(self.g.number_of_edges(), len(self.edges)) + + def test_forw_bfs(self): + # do a forward bfs + self.assertEqual( self.g.forw_bfs(1), + [1, 2, 3, 4, 5, 7, 8, 13, 11, 10, 12, 9]) + + + def test_get_hops(self): + # diplay the hops and hop numbers between nodes + self.assertEqual(self.g.get_hops(1, 8), + [(1, 0), (2, 1), (3, 1), (4, 2), (5, 3), (7, 4), (8, 5)]) + + def test_shortest_path(self): + self.assertEqual(GraphAlgo.shortest_path(self.g, 1, 12), + [1, 2, 4, 5, 7, 13, 11, 12]) + + +if __name__ == "__main__": # pragma: no cover + unittest.main() diff --git a/python/altgraph/altgraph_tests/test_dot.py b/python/altgraph/altgraph_tests/test_dot.py new file mode 100644 index 000000000..83993dad5 --- /dev/null +++ b/python/altgraph/altgraph_tests/test_dot.py @@ -0,0 +1,370 @@ +import unittest +import os + +from altgraph import Dot +from altgraph import Graph +from altgraph import GraphError + + +class TestDot (unittest.TestCase): + + def test_constructor(self): + g = Graph.Graph([ + (1,2), + (1,3), + (1,4), + (2,4), + (2,6), + (2,7), + (7,4), + (6,1), + ] + ) + + dot = Dot.Dot(g) + + self.assertEqual(dot.name, 'G') + self.assertEqual(dot.attr, {}) + self.assertEqual(dot.temp_dot, 'tmp_dot.dot') + self.assertEqual(dot.temp_neo, 'tmp_neo.dot') + self.assertEqual(dot.dot, 'dot') + self.assertEqual(dot.dotty, 'dotty') + self.assertEqual(dot.neato, 'neato') + self.assertEqual(dot.type, 'digraph') + + self.assertEqual(dot.nodes, dict([(x, {}) for x in g])) + + edges = {} + for head in g: + edges[head] = {} + for tail in g.out_nbrs(head): + edges[head][tail] = {} + + self.assertEqual(dot.edges[1], edges[1]) + self.assertEqual(dot.edges, edges) + + + dot = Dot.Dot(g, nodes=[1,2], + edgefn=lambda node: list(sorted(g.out_nbrs(node)))[:-1], + nodevisitor=lambda node: {'label': node}, + edgevisitor=lambda head, tail: {'label': (head, tail) }, + name="testgraph", + dot='/usr/local/bin/dot', + dotty='/usr/local/bin/dotty', + neato='/usr/local/bin/neato', + graphtype="graph") + + self.assertEqual(dot.name, 'testgraph') + self.assertEqual(dot.attr, {}) + self.assertEqual(dot.temp_dot, 'tmp_dot.dot') + self.assertEqual(dot.temp_neo, 'tmp_neo.dot') + self.assertEqual(dot.dot, '/usr/local/bin/dot') + self.assertEqual(dot.dotty, '/usr/local/bin/dotty') + self.assertEqual(dot.neato, '/usr/local/bin/neato') + self.assertEqual(dot.type, 'graph') + + self.assertEqual(dot.nodes, dict([(x, {'label': x}) for x in [1,2]])) + + edges = {} + for head in [1,2]: + edges[head] = {} + for tail in list(sorted(g.out_nbrs(head)))[:-1]: + if tail not in [1,2]: continue + edges[head][tail] = {'label': (head, tail) } + + self.assertEqual(dot.edges[1], edges[1]) + self.assertEqual(dot.edges, edges) + + self.assertRaises(GraphError, Dot.Dot, g, nodes=[1,2, 9]) + + def test_style(self): + g = Graph.Graph([]) + + dot = Dot.Dot(g) + + self.assertEqual(dot.attr, {}) + + dot.style(key='value') + self.assertEqual(dot.attr, {'key': 'value'}) + + dot.style(key2='value2') + self.assertEqual(dot.attr, {'key2': 'value2'}) + + def test_node_style(self): + g = Graph.Graph([ + (1,2), + (1,3), + (1,4), + (2,4), + (2,6), + (2,7), + (7,4), + (6,1), + ] + ) + + dot = Dot.Dot(g) + + self.assertEqual(dot.nodes[1], {}) + + dot.node_style(1, key='value') + self.assertEqual(dot.nodes[1], {'key': 'value'}) + + dot.node_style(1, key2='value2') + self.assertEqual(dot.nodes[1], {'key2': 'value2'}) + self.assertEqual(dot.nodes[2], {}) + + dot.all_node_style(key3='value3') + for n in g: + self.assertEqual(dot.nodes[n], {'key3': 'value3'}) + + self.assertTrue(9 not in dot.nodes) + dot.node_style(9, key='value') + self.assertEqual(dot.nodes[9], {'key': 'value'}) + + def test_edge_style(self): + g = Graph.Graph([ + (1,2), + (1,3), + (1,4), + (2,4), + (2,6), + (2,7), + (7,4), + (6,1), + ] + ) + + dot = Dot.Dot(g) + + self.assertEqual(dot.edges[1][2], {}) + dot.edge_style(1,2, foo='bar') + self.assertEqual(dot.edges[1][2], {'foo': 'bar'}) + + dot.edge_style(1,2, foo2='2bar') + self.assertEqual(dot.edges[1][2], {'foo2': '2bar'}) + + self.assertEqual(dot.edges[1][3], {}) + + self.assertFalse(6 in dot.edges[1]) + dot.edge_style(1,6, foo2='2bar') + self.assertEqual(dot.edges[1][6], {'foo2': '2bar'}) + + self.assertRaises(GraphError, dot.edge_style, 1, 9, a=1) + self.assertRaises(GraphError, dot.edge_style, 9, 1, a=1) + + + def test_iter(self): + g = Graph.Graph([ + (1,2), + (1,3), + (1,4), + (2,4), + (2,6), + (2,7), + (7,4), + (6,1), + ] + ) + + dot = Dot.Dot(g) + dot.style(graph="foobar") + dot.node_style(1, key='value') + dot.node_style(2, key='another', key2='world') + dot.edge_style(1,4, key1='value1', key2='value2') + dot.edge_style(2,4, key1='valueA') + + self.assertEqual(list(iter(dot)), list(dot.iterdot())) + + for item in dot.iterdot(): + self.assertTrue(isinstance(item, str)) + + first = list(dot.iterdot())[0] + self.assertEqual(first, "digraph %s {\n"%(dot.name,)) + + dot.type = 'graph' + first = list(dot.iterdot())[0] + self.assertEqual(first, "graph %s {\n"%(dot.name,)) + + dot.type = 'foo' + self.assertRaises(GraphError, list, dot.iterdot()) + dot.type = 'digraph' + + self.assertEqual(list(dot), [ + 'digraph G {\n', + 'graph="foobar";', + '\n', + + '\t"1" [', + 'key="value",', + '];\n', + + '\t"2" [', + 'key="another",', + 'key2="world",', + '];\n', + + '\t"3" [', + '];\n', + + '\t"4" [', + '];\n', + + '\t"6" [', + '];\n', + + '\t"7" [', + '];\n', + + '\t"1" -> "2" [', + '];\n', + + '\t"1" -> "3" [', + '];\n', + + '\t"1" -> "4" [', + 'key1="value1",', + 'key2="value2",', + '];\n', + + '\t"2" -> "4" [', + 'key1="valueA",', + '];\n', + + '\t"2" -> "6" [', + '];\n', + + '\t"2" -> "7" [', + '];\n', + + '\t"6" -> "1" [', + '];\n', + + '\t"7" -> "4" [', + '];\n', + '}\n']) + + + def test_save(self): + g = Graph.Graph([ + (1,2), + (1,3), + (1,4), + (2,4), + (2,6), + (2,7), + (7,4), + (6,1), + ] + ) + + dot = Dot.Dot(g) + dot.style(graph="foobar") + dot.node_style(1, key='value') + dot.node_style(2, key='another', key2='world') + dot.edge_style(1,4, key1='value1', key2='value2') + dot.edge_style(2,4, key1='valueA') + + fn = 'test_dot.dot' + self.assertTrue(not os.path.exists(fn)) + + try: + dot.save_dot(fn) + + fp = open(fn, 'r') + data = fp.read() + fp.close() + self.assertEqual(data, ''.join(dot)) + + finally: + if os.path.exists(fn): + os.unlink(fn) + + + def test_img(self): + g = Graph.Graph([ + (1,2), + (1,3), + (1,4), + (2,4), + (2,6), + (2,7), + (7,4), + (6,1), + ] + ) + + dot = Dot.Dot(g, dot='/usr/local/bin/!!dot', dotty='/usr/local/bin/!!dotty', neato='/usr/local/bin/!!neato') + dot.style(size='10,10', rankdir='RL', page='5, 5' , ranksep=0.75) + dot.node_style(1, label='BASE_NODE',shape='box', color='blue') + dot.node_style(2, style='filled', fillcolor='red') + dot.edge_style(1,4, style='dotted') + dot.edge_style(2,4, arrowhead='dot', label='binds', labelangle='90') + + system_cmds = [] + def fake_system(cmd): + system_cmds.append(cmd) + return None + + try: + real_system = os.system + os.system = fake_system + + system_cmds = [] + dot.save_img('foo') + self.assertEqual(system_cmds, ['/usr/local/bin/!!dot -Tgif tmp_dot.dot -o foo.gif']) + + system_cmds = [] + dot.save_img('foo', file_type='jpg') + self.assertEqual(system_cmds, ['/usr/local/bin/!!dot -Tjpg tmp_dot.dot -o foo.jpg']) + + system_cmds = [] + dot.save_img('bar', file_type='jpg', mode='neato') + self.assertEqual(system_cmds, [ + '/usr/local/bin/!!neato -o tmp_dot.dot tmp_neo.dot', + '/usr/local/bin/!!dot -Tjpg tmp_dot.dot -o bar.jpg', + ]) + + system_cmds = [] + dot.display() + self.assertEqual(system_cmds, [ + '/usr/local/bin/!!dotty tmp_dot.dot' + ]) + + system_cmds = [] + dot.display(mode='neato') + self.assertEqual(system_cmds, [ + '/usr/local/bin/!!neato -o tmp_dot.dot tmp_neo.dot', + '/usr/local/bin/!!dotty tmp_dot.dot' + ]) + + finally: + if os.path.exists(dot.temp_dot): + os.unlink(dot.temp_dot) + if os.path.exists(dot.temp_neo): + os.unlink(dot.temp_neo) + os.system = real_system + + if os.path.exists('/usr/local/bin/dot') and os.path.exists('/usr/local/bin/neato'): + try: + dot.dot='/usr/local/bin/dot' + dot.neato='/usr/local/bin/neato' + self.assertFalse(os.path.exists('foo.gif')) + dot.save_img('foo') + self.assertTrue(os.path.exists('foo.gif')) + os.unlink('foo.gif') + + self.assertFalse(os.path.exists('foo.gif')) + dot.save_img('foo', mode='neato') + self.assertTrue(os.path.exists('foo.gif')) + os.unlink('foo.gif') + + finally: + if os.path.exists(dot.temp_dot): + os.unlink(dot.temp_dot) + if os.path.exists(dot.temp_neo): + os.unlink(dot.temp_neo) + + +if __name__ == "__main__": # pragma: no cover + unittest.main() diff --git a/python/altgraph/altgraph_tests/test_graph.py b/python/altgraph/altgraph_tests/test_graph.py new file mode 100644 index 000000000..553549f5a --- /dev/null +++ b/python/altgraph/altgraph_tests/test_graph.py @@ -0,0 +1,644 @@ +import unittest + +from altgraph import GraphError +from altgraph.Graph import Graph + +class TestGraph (unittest.TestCase): + + def test_nodes(self): + graph = Graph() + + self.assertEqual(graph.node_list(), []) + + o1 = object() + o1b = object() + o2 = object() + graph.add_node(1, o1) + graph.add_node(1, o1b) + graph.add_node(2, o2) + graph.add_node(3) + + self.assertRaises(TypeError, graph.add_node, []) + + self.assertTrue(graph.node_data(1) is o1) + self.assertTrue(graph.node_data(2) is o2) + self.assertTrue(graph.node_data(3) is None) + + self.assertTrue(1 in graph) + self.assertTrue(2 in graph) + self.assertTrue(3 in graph) + + self.assertEqual(graph.number_of_nodes(), 3) + self.assertEqual(graph.number_of_hidden_nodes(), 0) + self.assertEqual(graph.hidden_node_list(), []) + self.assertEqual(list(sorted(graph)), [1, 2, 3]) + + graph.hide_node(1) + graph.hide_node(2) + graph.hide_node(3) + + + self.assertEqual(graph.number_of_nodes(), 0) + self.assertEqual(graph.number_of_hidden_nodes(), 3) + self.assertEqual(list(sorted(graph.hidden_node_list())), [1, 2, 3]) + + self.assertFalse(1 in graph) + self.assertFalse(2 in graph) + self.assertFalse(3 in graph) + + graph.add_node(1) + self.assertFalse(1 in graph) + + graph.restore_node(1) + self.assertTrue(1 in graph) + self.assertFalse(2 in graph) + self.assertFalse(3 in graph) + + graph.restore_all_nodes() + self.assertTrue(1 in graph) + self.assertTrue(2 in graph) + self.assertTrue(3 in graph) + + self.assertEqual(list(sorted(graph.node_list())), [1, 2, 3]) + + v = graph.describe_node(1) + self.assertEqual(v, (1, o1, [], [])) + + def test_edges(self): + graph = Graph() + graph.add_node(1) + graph.add_node(2) + graph.add_node(3) + graph.add_node(4) + graph.add_node(5) + + self.assertTrue(isinstance(graph.edge_list(), list)) + + graph.add_edge(1, 2) + graph.add_edge(4, 5, 'a') + + self.assertRaises(GraphError, graph.add_edge, 'a', 'b', create_nodes=False) + + self.assertEqual(graph.number_of_hidden_edges(), 0) + self.assertEqual(graph.number_of_edges(), 2) + e = graph.edge_by_node(1, 2) + self.assertTrue(isinstance(e, int)) + graph.hide_edge(e) + self.assertEqual(graph.number_of_hidden_edges(), 1) + self.assertEqual(graph.number_of_edges(), 1) + e2 = graph.edge_by_node(1, 2) + self.assertTrue(e2 is None) + + graph.restore_edge(e) + e2 = graph.edge_by_node(1, 2) + self.assertEqual(e, e2) + self.assertEqual(graph.number_of_hidden_edges(), 0) + + self.assertEqual(graph.number_of_edges(), 2) + + e1 = graph.edge_by_node(1, 2) + e2 = graph.edge_by_node(4, 5) + graph.hide_edge(e1) + graph.hide_edge(e2) + + self.assertEqual(graph.number_of_edges(), 0) + graph.restore_all_edges() + self.assertEqual(graph.number_of_edges(), 2) + + self.assertEqual(graph.edge_by_id(e1), (1,2)) + self.assertRaises(GraphError, graph.edge_by_id, (e1+1)*(e2+1)+1) + + self.assertEqual(list(sorted(graph.edge_list())), [e1, e2]) + + self.assertEqual(graph.describe_edge(e1), (e1, 1, 1, 2)) + self.assertEqual(graph.describe_edge(e2), (e2, 'a', 4, 5)) + + self.assertEqual(graph.edge_data(e1), 1) + self.assertEqual(graph.edge_data(e2), 'a') + + self.assertEqual(graph.head(e2), 4) + self.assertEqual(graph.tail(e2), 5) + + graph.add_edge(1, 3) + graph.add_edge(1, 5) + graph.add_edge(4, 1) + + self.assertEqual(list(sorted(graph.out_nbrs(1))), [2, 3, 5]) + self.assertEqual(list(sorted(graph.inc_nbrs(1))), [4]) + self.assertEqual(list(sorted(graph.inc_nbrs(5))), [1, 4]) + self.assertEqual(list(sorted(graph.all_nbrs(1))), [2, 3, 4, 5]) + + graph.add_edge(5, 1) + self.assertEqual(list(sorted(graph.all_nbrs(5))), [1, 4]) + + self.assertEqual(graph.out_degree(1), 3) + self.assertEqual(graph.inc_degree(2), 1) + self.assertEqual(graph.inc_degree(5), 2) + self.assertEqual(graph.all_degree(5), 3) + + v = graph.out_edges(4) + self.assertTrue(isinstance(v, list)) + self.assertEqual(graph.edge_by_id(v[0]), (4, 5)) + + v = graph.out_edges(1) + for e in v: + self.assertEqual(graph.edge_by_id(e)[0], 1) + + v = graph.inc_edges(1) + self.assertTrue(isinstance(v, list)) + self.assertEqual(graph.edge_by_id(v[0]), (4, 1)) + + v = graph.inc_edges(5) + for e in v: + self.assertEqual(graph.edge_by_id(e)[1], 5) + + v = graph.all_edges(5) + for e in v: + self.assertTrue(graph.edge_by_id(e)[1] == 5 or graph.edge_by_id(e)[0] == 5) + + e1 = graph.edge_by_node(1, 2) + self.assertTrue(isinstance(e1, int)) + graph.hide_node(1) + self.assertRaises(GraphError, graph.edge_by_node, 1, 2) + graph.restore_node(1) + e2 = graph.edge_by_node(1, 2) + self.assertEqual(e1, e2) + + + + def test_toposort(self): + graph = Graph() + graph.add_node(1) + graph.add_node(2) + graph.add_node(3) + graph.add_node(4) + graph.add_node(5) + + graph.add_edge(1, 2) + graph.add_edge(1, 3) + graph.add_edge(2, 4) + graph.add_edge(3, 5) + + ok, result = graph.forw_topo_sort() + self.assertTrue(ok) + for idx in range(1, 6): + self.assertTrue(idx in result) + + self.assertTrue(result.index(1) < result.index(2)) + self.assertTrue(result.index(1) < result.index(3)) + self.assertTrue(result.index(2) < result.index(4)) + self.assertTrue(result.index(3) < result.index(5)) + + ok, result = graph.back_topo_sort() + self.assertTrue(ok) + for idx in range(1, 6): + self.assertTrue(idx in result) + self.assertTrue(result.index(2) < result.index(1)) + self.assertTrue(result.index(3) < result.index(1)) + self.assertTrue(result.index(4) < result.index(2)) + self.assertTrue(result.index(5) < result.index(3)) + + + # Same graph as before, but with edges + # reversed, which means we should get + # the same results as before if using + # back_topo_sort rather than forw_topo_sort + # (and v.v.) + + graph = Graph() + graph.add_node(1) + graph.add_node(2) + graph.add_node(3) + graph.add_node(4) + graph.add_node(5) + + graph.add_edge(2, 1) + graph.add_edge(3, 1) + graph.add_edge(4, 2) + graph.add_edge(5, 3) + + ok, result = graph.back_topo_sort() + self.assertTrue(ok) + for idx in range(1, 6): + self.assertTrue(idx in result) + + self.assertTrue(result.index(1) < result.index(2)) + self.assertTrue(result.index(1) < result.index(3)) + self.assertTrue(result.index(2) < result.index(4)) + self.assertTrue(result.index(3) < result.index(5)) + + ok, result = graph.forw_topo_sort() + self.assertTrue(ok) + for idx in range(1, 6): + self.assertTrue(idx in result) + self.assertTrue(result.index(2) < result.index(1)) + self.assertTrue(result.index(3) < result.index(1)) + self.assertTrue(result.index(4) < result.index(2)) + self.assertTrue(result.index(5) < result.index(3)) + + + # Create a cycle + graph.add_edge(1, 5) + ok, result = graph.forw_topo_sort() + self.assertFalse(ok) + ok, result = graph.back_topo_sort() + self.assertFalse(ok) + + def test_bfs_subgraph(self): + graph = Graph() + graph.add_edge(1, 2) + graph.add_edge(1, 4) + graph.add_edge(2, 4) + graph.add_edge(4, 8) + graph.add_edge(4, 9) + graph.add_edge(4, 10) + graph.add_edge(8, 10) + + subgraph = graph.forw_bfs_subgraph(10) + self.assertTrue(isinstance(subgraph, Graph)) + self.assertEqual(subgraph.number_of_nodes(), 1) + self.assertTrue(10 in subgraph) + self.assertEqual(subgraph.number_of_edges(), 0) + + subgraph = graph.forw_bfs_subgraph(4) + self.assertTrue(isinstance(subgraph, Graph)) + self.assertEqual(subgraph.number_of_nodes(), 4) + self.assertTrue(4 in subgraph) + self.assertTrue(8 in subgraph) + self.assertTrue(9 in subgraph) + self.assertTrue(10 in subgraph) + self.assertEqual(subgraph.number_of_edges(), 4) + e = subgraph.edge_by_node(4, 8) + e = subgraph.edge_by_node(4, 9) + e = subgraph.edge_by_node(4, 10) + e = subgraph.edge_by_node(8, 10) + + # same graph as before, but switch around + # edges. This results in the same test results + # but now for back_bfs_subgraph rather than + # forw_bfs_subgraph + + graph = Graph() + graph.add_edge(2, 1) + graph.add_edge(4, 1) + graph.add_edge(4, 2) + graph.add_edge(8, 4) + graph.add_edge(9, 4) + graph.add_edge(10, 4) + graph.add_edge(10, 8) + + subgraph = graph.back_bfs_subgraph(10) + self.assertTrue(isinstance(subgraph, Graph)) + self.assertEqual(subgraph.number_of_nodes(), 1) + self.assertTrue(10 in subgraph) + self.assertEqual(subgraph.number_of_edges(), 0) + + subgraph = graph.back_bfs_subgraph(4) + self.assertTrue(isinstance(subgraph, Graph)) + self.assertEqual(subgraph.number_of_nodes(), 4) + self.assertTrue(4 in subgraph) + self.assertTrue(8 in subgraph) + self.assertTrue(9 in subgraph) + self.assertTrue(10 in subgraph) + self.assertEqual(subgraph.number_of_edges(), 4) + e = subgraph.edge_by_node(4, 8) + e = subgraph.edge_by_node(4, 9) + e = subgraph.edge_by_node(4, 10) + e = subgraph.edge_by_node(8, 10) + + def test_iterdfs(self): + graph = Graph() + graph.add_edge("1", "1.1") + graph.add_edge("1", "1.2") + graph.add_edge("1", "1.3") + graph.add_edge("1.1", "1.1.1") + graph.add_edge("1.1", "1.1.2") + graph.add_edge("1.2", "1.2.1") + graph.add_edge("1.2", "1.2.2") + graph.add_edge("1.2.2", "1.2.2.1") + graph.add_edge("1.2.2", "1.2.2.2") + graph.add_edge("1.2.2", "1.2.2.3") + + result = list(graph.iterdfs("1")) + self.assertEqual(result, [ + '1', '1.3', '1.2', '1.2.2', '1.2.2.3', '1.2.2.2', + '1.2.2.1', '1.2.1', '1.1', '1.1.2', '1.1.1' + ]) + result = list(graph.iterdfs("1", "1.2.1")) + self.assertEqual(result, [ + '1', '1.3', '1.2', '1.2.2', '1.2.2.3', '1.2.2.2', + '1.2.2.1', '1.2.1' + ]) + + result = graph.forw_dfs("1") + self.assertEqual(result, [ + '1', '1.3', '1.2', '1.2.2', '1.2.2.3', '1.2.2.2', + '1.2.2.1', '1.2.1', '1.1', '1.1.2', '1.1.1' + ]) + result = graph.forw_dfs("1", "1.2.1") + self.assertEqual(result, [ + '1', '1.3', '1.2', '1.2.2', '1.2.2.3', '1.2.2.2', + '1.2.2.1', '1.2.1' + ]) + + graph = Graph() + graph.add_edge("1.1", "1") + graph.add_edge("1.2", "1") + graph.add_edge("1.3", "1") + graph.add_edge("1.1.1", "1.1") + graph.add_edge("1.1.2", "1.1") + graph.add_edge("1.2.1", "1.2") + graph.add_edge("1.2.2", "1.2") + graph.add_edge("1.2.2.1", "1.2.2") + graph.add_edge("1.2.2.2", "1.2.2") + graph.add_edge("1.2.2.3", "1.2.2") + + result = list(graph.iterdfs("1", forward=False)) + self.assertEqual(result, [ + '1', '1.3', '1.2', '1.2.2', '1.2.2.3', '1.2.2.2', + '1.2.2.1', '1.2.1', '1.1', '1.1.2', '1.1.1' + ]) + result = list(graph.iterdfs("1", "1.2.1", forward=False)) + self.assertEqual(result, [ + '1', '1.3', '1.2', '1.2.2', '1.2.2.3', '1.2.2.2', + '1.2.2.1', '1.2.1' + ]) + result = graph.back_dfs("1") + self.assertEqual(result, [ + '1', '1.3', '1.2', '1.2.2', '1.2.2.3', '1.2.2.2', + '1.2.2.1', '1.2.1', '1.1', '1.1.2', '1.1.1' + ]) + result = graph.back_dfs("1", "1.2.1") + self.assertEqual(result, [ + '1', '1.3', '1.2', '1.2.2', '1.2.2.3', '1.2.2.2', + '1.2.2.1', '1.2.1' + ]) + + + # Introduce cyle: + graph.add_edge("1", "1.2") + result = list(graph.iterdfs("1", forward=False)) + self.assertEqual(result, [ + '1', '1.3', '1.2', '1.2.2', '1.2.2.3', '1.2.2.2', + '1.2.2.1', '1.2.1', '1.1', '1.1.2', '1.1.1' + ]) + + result = graph.back_dfs("1") + self.assertEqual(result, [ + '1', '1.3', '1.2', '1.2.2', '1.2.2.3', '1.2.2.2', + '1.2.2.1', '1.2.1', '1.1', '1.1.2', '1.1.1' + ]) + + + def test_iterdata(self): + graph = Graph() + graph.add_node("1", "I") + graph.add_node("1.1", "I.I") + graph.add_node("1.2", "I.II") + graph.add_node("1.3", "I.III") + graph.add_node("1.1.1", "I.I.I") + graph.add_node("1.1.2", "I.I.II") + graph.add_node("1.2.1", "I.II.I") + graph.add_node("1.2.2", "I.II.II") + graph.add_node("1.2.2.1", "I.II.II.I") + graph.add_node("1.2.2.2", "I.II.II.II") + graph.add_node("1.2.2.3", "I.II.II.III") + + graph.add_edge("1", "1.1") + graph.add_edge("1", "1.2") + graph.add_edge("1", "1.3") + graph.add_edge("1.1", "1.1.1") + graph.add_edge("1.1", "1.1.2") + graph.add_edge("1.2", "1.2.1") + graph.add_edge("1.2", "1.2.2") + graph.add_edge("1.2.2", "1.2.2.1") + graph.add_edge("1.2.2", "1.2.2.2") + graph.add_edge("1.2.2", "1.2.2.3") + + result = list(graph.iterdata("1", forward=True)) + self.assertEqual(result, [ + 'I', 'I.III', 'I.II', 'I.II.II', 'I.II.II.III', 'I.II.II.II', + 'I.II.II.I', 'I.II.I', 'I.I', 'I.I.II', 'I.I.I' + ]) + + result = list(graph.iterdata("1", end="1.2.1", forward=True)) + self.assertEqual(result, [ + 'I', 'I.III', 'I.II', 'I.II.II', 'I.II.II.III', 'I.II.II.II', + 'I.II.II.I', 'I.II.I' + ]) + + result = list(graph.iterdata("1", condition=lambda n: len(n) < 6, forward=True)) + self.assertEqual(result, [ + 'I', 'I.III', 'I.II', + 'I.I', 'I.I.I' + ]) + + + # And the revese option: + graph = Graph() + graph.add_node("1", "I") + graph.add_node("1.1", "I.I") + graph.add_node("1.2", "I.II") + graph.add_node("1.3", "I.III") + graph.add_node("1.1.1", "I.I.I") + graph.add_node("1.1.2", "I.I.II") + graph.add_node("1.2.1", "I.II.I") + graph.add_node("1.2.2", "I.II.II") + graph.add_node("1.2.2.1", "I.II.II.I") + graph.add_node("1.2.2.2", "I.II.II.II") + graph.add_node("1.2.2.3", "I.II.II.III") + + graph.add_edge("1.1", "1") + graph.add_edge("1.2", "1") + graph.add_edge("1.3", "1") + graph.add_edge("1.1.1", "1.1") + graph.add_edge("1.1.2", "1.1") + graph.add_edge("1.2.1", "1.2") + graph.add_edge("1.2.2", "1.2") + graph.add_edge("1.2.2.1", "1.2.2") + graph.add_edge("1.2.2.2", "1.2.2") + graph.add_edge("1.2.2.3", "1.2.2") + + result = list(graph.iterdata("1", forward=False)) + self.assertEqual(result, [ + 'I', 'I.III', 'I.II', 'I.II.II', 'I.II.II.III', 'I.II.II.II', + 'I.II.II.I', 'I.II.I', 'I.I', 'I.I.II', 'I.I.I' + ]) + + result = list(graph.iterdata("1", end="1.2.1", forward=False)) + self.assertEqual(result, [ + 'I', 'I.III', 'I.II', 'I.II.II', 'I.II.II.III', 'I.II.II.II', + 'I.II.II.I', 'I.II.I' + ]) + + result = list(graph.iterdata("1", condition=lambda n: len(n) < 6, forward=False)) + self.assertEqual(result, [ + 'I', 'I.III', 'I.II', + 'I.I', 'I.I.I' + ]) + + def test_bfs(self): + graph = Graph() + graph.add_edge("1", "1.1") + graph.add_edge("1.1", "1.1.1") + graph.add_edge("1.1", "1.1.2") + graph.add_edge("1.1.2", "1.1.2.1") + graph.add_edge("1.1.2", "1.1.2.2") + graph.add_edge("1", "1.2") + graph.add_edge("1", "1.3") + graph.add_edge("1.2", "1.2.1") + + self.assertEqual(graph.forw_bfs("1"), + ['1', '1.1', '1.2', '1.3', '1.1.1', '1.1.2', '1.2.1', '1.1.2.1', '1.1.2.2']) + self.assertEqual(graph.forw_bfs("1", "1.1.1"), + ['1', '1.1', '1.2', '1.3', '1.1.1']) + + + # And the "reverse" graph + graph = Graph() + graph.add_edge("1.1", "1") + graph.add_edge("1.1.1", "1.1") + graph.add_edge("1.1.2", "1.1") + graph.add_edge("1.1.2.1", "1.1.2") + graph.add_edge("1.1.2.2", "1.1.2") + graph.add_edge("1.2", "1") + graph.add_edge("1.3", "1") + graph.add_edge("1.2.1", "1.2") + + self.assertEqual(graph.back_bfs("1"), + ['1', '1.1', '1.2', '1.3', '1.1.1', '1.1.2', '1.2.1', '1.1.2.1', '1.1.2.2']) + self.assertEqual(graph.back_bfs("1", "1.1.1"), + ['1', '1.1', '1.2', '1.3', '1.1.1']) + + + + # check cycle handling + graph.add_edge("1", "1.2.1") + self.assertEqual(graph.back_bfs("1"), + ['1', '1.1', '1.2', '1.3', '1.1.1', '1.1.2', '1.2.1', '1.1.2.1', '1.1.2.2']) + + + def test_connected(self): + graph = Graph() + graph.add_node(1) + graph.add_node(2) + graph.add_node(3) + graph.add_node(4) + + self.assertFalse(graph.connected()) + + graph.add_edge(1, 2) + graph.add_edge(3, 4) + self.assertFalse(graph.connected()) + + graph.add_edge(2, 3) + graph.add_edge(4, 1) + self.assertTrue(graph.connected()) + + def test_edges_complex(self): + g = Graph() + g.add_edge(1, 2) + e = g.edge_by_node(1,2) + g.hide_edge(e) + g.hide_node(2) + self.assertRaises(GraphError, g.restore_edge, e) + + g.restore_all_edges() + self.assertRaises(GraphError, g.edge_by_id, e) + + def test_clust_coef(self): + g = Graph() + g.add_edge(1, 2) + g.add_edge(1, 3) + g.add_edge(1, 4) + self.assertEqual(g.clust_coef(1), 0) + + g.add_edge(2, 5) + g.add_edge(3, 5) + g.add_edge(4, 5) + self.assertEqual(g.clust_coef(1), 0) + + g.add_edge(2, 3) + self.assertEqual(g.clust_coef(1), 1./6) + g.add_edge(2, 4) + self.assertEqual(g.clust_coef(1), 2./6) + g.add_edge(4, 2) + self.assertEqual(g.clust_coef(1), 3./6) + + g.add_edge(2, 3) + g.add_edge(2, 4) + g.add_edge(3, 4) + g.add_edge(3, 2) + g.add_edge(4, 2) + g.add_edge(4, 3) + self.assertEqual(g.clust_coef(1), 1) + + + def test_get_hops(self): + graph = Graph() + graph.add_edge(1, 2) + graph.add_edge(1, 3) + graph.add_edge(2, 4) + graph.add_edge(4, 5) + graph.add_edge(5, 7) + graph.add_edge(7, 8) + + self.assertEqual(graph.get_hops(1), + [(1, 0), (2, 1), (3, 1), (4, 2), (5, 3), (7, 4), (8, 5)]) + + self.assertEqual(graph.get_hops(1, 5), + [(1, 0), (2, 1), (3, 1), (4, 2), (5, 3)]) + + graph.add_edge(5, 1) + graph.add_edge(7, 1) + graph.add_edge(7, 4) + + self.assertEqual(graph.get_hops(1), + [(1, 0), (2, 1), (3, 1), (4, 2), (5, 3), (7, 4), (8, 5)]) + + # And the reverse graph + graph = Graph() + graph.add_edge(2, 1) + graph.add_edge(3, 1) + graph.add_edge(4, 2) + graph.add_edge(5, 4) + graph.add_edge(7, 5) + graph.add_edge(8, 7) + + self.assertEqual(graph.get_hops(1, forward=False), + [(1, 0), (2, 1), (3, 1), (4, 2), (5, 3), (7, 4), (8, 5)]) + + self.assertEqual(graph.get_hops(1, 5, forward=False), + [(1, 0), (2, 1), (3, 1), (4, 2), (5, 3)]) + + graph.add_edge(1, 5) + graph.add_edge(1, 7) + graph.add_edge(4, 7) + + self.assertEqual(graph.get_hops(1, forward=False), + [(1, 0), (2, 1), (3, 1), (4, 2), (5, 3), (7, 4), (8, 5)]) + + + def test_constructor(self): + graph = Graph(iter([ + (1, 2), + (2, 3, 'a'), + (1, 3), + (3, 4), + ])) + self.assertEqual(graph.number_of_nodes(), 4) + self.assertEqual(graph.number_of_edges(), 4) + try: + graph.edge_by_node(1,2) + graph.edge_by_node(2,3) + graph.edge_by_node(1,3) + graph.edge_by_node(3,4) + except GraphError: + self.fail("Incorrect graph") + + self.assertEqual(graph.edge_data(graph.edge_by_node(2, 3)), 'a') + + self.assertRaises(GraphError, Graph, [(1,2,3,4)]) + +if __name__ == "__main__": # pragma: no cover + unittest.main() diff --git a/python/altgraph/altgraph_tests/test_graphstat.py b/python/altgraph/altgraph_tests/test_graphstat.py new file mode 100644 index 000000000..b628b6f24 --- /dev/null +++ b/python/altgraph/altgraph_tests/test_graphstat.py @@ -0,0 +1,70 @@ +import unittest + +from altgraph import GraphStat +from altgraph import Graph +import sys + +class TestDegreesDist (unittest.TestCase): + + def test_simple(self): + a = Graph.Graph() + self.assertEqual(GraphStat.degree_dist(a), []) + + a.add_node(1) + a.add_node(2) + a.add_node(3) + + self.assertEqual(GraphStat.degree_dist(a), GraphStat._binning([0, 0, 0])) + + for x in range(100): + a.add_node(x) + + for x in range(1, 100): + for y in range(1, 50): + if x % y == 0: + a.add_edge(x, y) + + counts_inc = [] + counts_out = [] + for n in a: + counts_inc.append(a.inc_degree(n)) + counts_out.append(a.out_degree(n)) + + self.assertEqual(GraphStat.degree_dist(a), GraphStat._binning(counts_out)) + self.assertEqual(GraphStat.degree_dist(a, mode='inc'), GraphStat._binning(counts_inc)) + +class TestBinning (unittest.TestCase): + def test_simple(self): + + # Binning [0, 100) into 10 bins + a = list(range(100)) + out = GraphStat._binning(a, limits=(0, 100), bin_num=10) + + self.assertEqual(out, + [ (x*1.0, 10) for x in range(5, 100, 10) ]) + + + # Check that outliers are ignored. + a = list(range(100)) + out = GraphStat._binning(a, limits=(0, 90), bin_num=9) + + self.assertEqual(out, + [ (x*1.0, 10) for x in range(5, 90, 10) ]) + + + out = GraphStat._binning(a, limits=(0, 100), bin_num=15) + binSize = 100 / 15.0 + result = [0]*15 + for i in range(100): + bin = int(i/binSize) + try: + result[bin] += 1 + except IndexError: + pass + + result = [ (i * binSize + binSize/2, result[i]) for i in range(len(result))] + + self.assertEqual(result, out) + +if __name__ == "__main__": # pragma: no cover + unittest.main() diff --git a/python/altgraph/altgraph_tests/test_graphutil.py b/python/altgraph/altgraph_tests/test_graphutil.py new file mode 100644 index 000000000..c1166237c --- /dev/null +++ b/python/altgraph/altgraph_tests/test_graphutil.py @@ -0,0 +1,140 @@ +import unittest +from altgraph import GraphUtil +from altgraph import Graph, GraphError + +class TestGraphUtil (unittest.TestCase): + + def test_generate_random(self): + g = GraphUtil.generate_random_graph(10, 50) + self.assertEqual(g.number_of_nodes(), 10) + self.assertEqual(g.number_of_edges(), 50) + + seen = set() + + for e in g.edge_list(): + h, t = g.edge_by_id(e) + self.assertFalse(h == t) + self.assertTrue((h, t) not in seen) + seen.add((h, t)) + + g = GraphUtil.generate_random_graph(5, 30, multi_edges=True) + self.assertEqual(g.number_of_nodes(), 5) + self.assertEqual(g.number_of_edges(), 30) + + seen = set() + + for e in g.edge_list(): + h, t = g.edge_by_id(e) + self.assertFalse(h == t) + if (h, t) in seen: + break + seen.add((h, t)) + + else: + self.fail("no duplicates?") + + g = GraphUtil.generate_random_graph(5, 21, self_loops=True) + self.assertEqual(g.number_of_nodes(), 5) + self.assertEqual(g.number_of_edges(), 21) + + seen = set() + + for e in g.edge_list(): + h, t = g.edge_by_id(e) + self.assertFalse((h, t) in seen) + if h == t: + break + seen.add((h, t)) + + else: + self.fail("no self loops?") + + self.assertRaises(GraphError, GraphUtil.generate_random_graph, 5, 21) + g = GraphUtil.generate_random_graph(5, 21, True) + self.assertRaises(GraphError, GraphUtil.generate_random_graph, 5, 26, True) + + def test_generate_scale_free(self): + graph = GraphUtil.generate_scale_free_graph(50, 10) + self.assertEqual(graph.number_of_nodes(), 500) + + counts = {} + for node in graph: + degree = graph.inc_degree(node) + try: + counts[degree] += 1 + except KeyError: + counts[degree] = 1 + + total_counts = sum(counts.values()) + P = {} + for degree, count in counts.items(): + P[degree] = count * 1.0 / total_counts + + # XXX: use algoritm <http://stackoverflow.com/questions/3433486/how-to-do-exponential-and-logarithmic-curve-fitting-in-python-i-found-only-polyn> + # to check if P[degree] ~ degree ** G (for some G) + + #print sorted(P.items()) + + #print sorted([(count, degree) for degree, count in counts.items()]) + + #self.fail("missing tests for GraphUtil.generate_scale_free_graph") + + def test_filter_stack(self): + g = Graph.Graph() + g.add_node("1", "N.1") + g.add_node("1.1", "N.1.1") + g.add_node("1.1.1", "N.1.1.1") + g.add_node("1.1.2", "N.1.1.2") + g.add_node("1.1.3", "N.1.1.3") + g.add_node("1.1.1.1", "N.1.1.1.1") + g.add_node("1.1.1.2", "N.1.1.1.2") + g.add_node("1.1.2.1", "N.1.1.2.1") + g.add_node("1.1.2.2", "N.1.1.2.2") + g.add_node("1.1.2.3", "N.1.1.2.3") + g.add_node("2", "N.2") + + g.add_edge("1", "1.1") + g.add_edge("1.1", "1.1.1") + g.add_edge("1.1", "1.1.2") + g.add_edge("1.1", "1.1.3") + g.add_edge("1.1.1", "1.1.1.1") + g.add_edge("1.1.1", "1.1.1.2") + g.add_edge("1.1.2", "1.1.2.1") + g.add_edge("1.1.2", "1.1.2.2") + g.add_edge("1.1.2", "1.1.2.3") + + v, r, o = GraphUtil.filter_stack(g, "1", [ + lambda n: n != "N.1.1.1", lambda n: n != "N.1.1.2.3" ]) + + self.assertEqual(v, + set(["1", "1.1", "1.1.1", "1.1.2", "1.1.3", + "1.1.1.1", "1.1.1.2", "1.1.2.1", "1.1.2.2", + "1.1.2.3"])) + self.assertEqual(r, set([ + "1.1.1", "1.1.2.3"])) + + o.sort() + self.assertEqual(o, + [ + ("1.1", "1.1.1.1"), + ("1.1", "1.1.1.2") + ]) + + v, r, o = GraphUtil.filter_stack(g, "1", [ + lambda n: n != "N.1.1.1", lambda n: n != "N.1.1.1.2" ]) + + self.assertEqual(v, + set(["1", "1.1", "1.1.1", "1.1.2", "1.1.3", + "1.1.1.1", "1.1.1.2", "1.1.2.1", "1.1.2.2", + "1.1.2.3"])) + self.assertEqual(r, set([ + "1.1.1", "1.1.1.2"])) + + self.assertEqual(o, + [ + ("1.1", "1.1.1.1"), + ]) + + +if __name__ == "__main__": # pragma: no cover + unittest.main() diff --git a/python/altgraph/altgraph_tests/test_object_graph.py b/python/altgraph/altgraph_tests/test_object_graph.py new file mode 100644 index 000000000..9035607e7 --- /dev/null +++ b/python/altgraph/altgraph_tests/test_object_graph.py @@ -0,0 +1,349 @@ +import unittest +import sys +from altgraph.ObjectGraph import ObjectGraph +from altgraph.Graph import Graph + +try: + from StringIO import StringIO +except ImportError: + from io import StringIO + + +class Node (object): + def __init__(self, graphident): + self.graphident = graphident + +class SubNode (Node): + pass + +class ArgNode (object): + def __init__(self, graphident, *args, **kwds): + self.graphident = graphident + self.args = args + self.kwds = kwds + + def __repr__(self): + return '<ArgNode %s>'%(self.graphident,) + +class TestObjectGraph (unittest.TestCase): + + def test_constructor(self): + graph = ObjectGraph() + self.assertTrue(isinstance(graph, ObjectGraph)) + + g = Graph() + graph = ObjectGraph(g) + self.assertTrue(graph.graph is g) + self.assertEqual(graph.debug, 0) + self.assertEqual(graph.indent, 0) + + graph = ObjectGraph(debug=5) + self.assertEqual(graph.debug, 5) + + def test_repr(self): + graph = ObjectGraph() + self.assertEqual(repr(graph), '<ObjectGraph>') + + + def testNodes(self): + graph = ObjectGraph() + n1 = Node("n1") + n2 = Node("n2") + n3 = Node("n3") + n4 = Node("n4") + + n1b = Node("n1") + + self.assertTrue(graph.getIdent(graph) is graph) + self.assertTrue(graph.getRawIdent(graph) is graph) + + graph.addNode(n1) + graph.addNode(n2) + graph.addNode(n3) + + self.assertTrue(n1 in graph) + self.assertFalse(n4 in graph) + self.assertTrue("n1" in graph) + self.assertFalse("n4" in graph) + + self.assertTrue(graph.findNode(n1) is n1) + self.assertTrue(graph.findNode(n1b) is n1) + self.assertTrue(graph.findNode(n2) is n2) + self.assertTrue(graph.findNode(n4) is None) + self.assertTrue(graph.findNode("n1") is n1) + self.assertTrue(graph.findNode("n2") is n2) + self.assertTrue(graph.findNode("n4") is None) + + self.assertEqual(graph.getRawIdent(n1), "n1") + self.assertEqual(graph.getRawIdent(n1b), "n1") + self.assertEqual(graph.getRawIdent(n4), "n4") + self.assertEqual(graph.getRawIdent("n1"), None) + + self.assertEqual(graph.getIdent(n1), "n1") + self.assertEqual(graph.getIdent(n1b), "n1") + self.assertEqual(graph.getIdent(n4), "n4") + self.assertEqual(graph.getIdent("n1"), "n1") + + self.assertTrue(n3 in graph) + graph.removeNode(n3) + self.assertTrue(n3 not in graph) + graph.addNode(n3) + self.assertTrue(n3 in graph) + + n = graph.createNode(SubNode, "n1") + self.assertTrue(n is n1) + + n = graph.createNode(SubNode, "n8") + self.assertTrue(isinstance(n, SubNode)) + self.assertTrue(n in graph) + self.assertTrue(graph.findNode("n8") is n) + + n = graph.createNode(ArgNode, "args", 1, 2, 3, a='a', b='b') + self.assertTrue(isinstance(n, ArgNode)) + self.assertTrue(n in graph) + self.assertTrue(graph.findNode("args") is n) + self.assertEqual(n.args, (1, 2, 3)) + self.assertEqual(n.kwds, {'a':'a', 'b':'b'}) + + def testEdges(self): + graph = ObjectGraph() + n1 = graph.createNode(ArgNode, "n1", 1) + n2 = graph.createNode(ArgNode, "n2", 1) + n3 = graph.createNode(ArgNode, "n3", 1) + n4 = graph.createNode(ArgNode, "n4", 1) + + graph.createReference(n1, n2, "n1-n2") + graph.createReference("n1", "n3", "n1-n3") + graph.createReference("n2", n3) + + g = graph.graph + e = g.edge_by_node("n1", "n2") + self.assertTrue(e is not None) + self.assertEqual(g.edge_data(e), "n1-n2") + + e = g.edge_by_node("n1", "n3") + self.assertTrue(e is not None) + self.assertEqual(g.edge_data(e), "n1-n3") + + e = g.edge_by_node("n2", "n3") + self.assertTrue(e is not None) + self.assertEqual(g.edge_data(e), None) + + e = g.edge_by_node("n1", "n4") + self.assertTrue(e is None) + + graph.removeReference(n1, n2) + e = g.edge_by_node("n1", "n2") + self.assertTrue(e is None) + + graph.removeReference("n1", "n3") + e = g.edge_by_node("n1", "n3") + self.assertTrue(e is None) + + graph.createReference(n1, n2, "foo") + e = g.edge_by_node("n1", "n2") + self.assertTrue(e is not None) + self.assertEqual(g.edge_data(e), "foo") + + + def test_flatten(self): + graph = ObjectGraph() + n1 = graph.createNode(ArgNode, "n1", 1) + n2 = graph.createNode(ArgNode, "n2", 2) + n3 = graph.createNode(ArgNode, "n3", 3) + n4 = graph.createNode(ArgNode, "n4", 4) + n5 = graph.createNode(ArgNode, "n5", 5) + n6 = graph.createNode(ArgNode, "n6", 6) + n7 = graph.createNode(ArgNode, "n7", 7) + n8 = graph.createNode(ArgNode, "n8", 8) + + graph.createReference(graph, n1) + graph.createReference(graph, n7) + graph.createReference(n1, n2) + graph.createReference(n1, n4) + graph.createReference(n2, n3) + graph.createReference(n2, n5) + graph.createReference(n5, n6) + graph.createReference(n4, n6) + graph.createReference(n4, n2) + + self.assertFalse(isinstance(graph.flatten(), list)) + + fl = list(graph.flatten()) + self.assertTrue(n1 in fl) + self.assertTrue(n2 in fl) + self.assertTrue(n3 in fl) + self.assertTrue(n4 in fl) + self.assertTrue(n5 in fl) + self.assertTrue(n6 in fl) + self.assertTrue(n7 in fl) + self.assertFalse(n8 in fl) + + fl = list(graph.flatten(start=n2)) + self.assertFalse(n1 in fl) + self.assertTrue(n2 in fl) + self.assertTrue(n3 in fl) + self.assertFalse(n4 in fl) + self.assertTrue(n5 in fl) + self.assertTrue(n6 in fl) + self.assertFalse(n7 in fl) + self.assertFalse(n8 in fl) + + graph.createReference(n1, n5) + fl = list(graph.flatten(lambda n: n.args[0] % 2 != 0)) + self.assertTrue(n1 in fl) + self.assertFalse(n2 in fl) + self.assertFalse(n3 in fl) + self.assertFalse(n4 in fl) + self.assertTrue(n5 in fl) + self.assertFalse(n6 in fl) + self.assertTrue(n7 in fl) + self.assertFalse(n8 in fl) + + def test_iter_nodes(self): + graph = ObjectGraph() + n1 = graph.createNode(ArgNode, "n1", 1) + n2 = graph.createNode(ArgNode, "n2", 2) + n3 = graph.createNode(ArgNode, "n3", 3) + n4 = graph.createNode(ArgNode, "n4", 4) + n5 = graph.createNode(ArgNode, "n5", 5) + n6 = graph.createNode(ArgNode, "n6", 5) + + nodes = graph.nodes() + if sys.version[0] == '2': + self.assertTrue(hasattr(nodes, 'next')) + else: + self.assertTrue(hasattr(nodes, '__next__')) + self.assertTrue(hasattr(nodes, '__iter__')) + + nodes = list(nodes) + self.assertEqual(len(nodes), 6) + self.assertTrue(n1 in nodes) + self.assertTrue(n2 in nodes) + self.assertTrue(n3 in nodes) + self.assertTrue(n4 in nodes) + self.assertTrue(n5 in nodes) + self.assertTrue(n6 in nodes) + + def test_get_edges(self): + graph = ObjectGraph() + n1 = graph.createNode(ArgNode, "n1", 1) + n2 = graph.createNode(ArgNode, "n2", 2) + n3 = graph.createNode(ArgNode, "n3", 3) + n4 = graph.createNode(ArgNode, "n4", 4) + n5 = graph.createNode(ArgNode, "n5", 5) + n6 = graph.createNode(ArgNode, "n6", 5) + + graph.createReference(n1, n2) + graph.createReference(n1, n3) + graph.createReference(n3, n1) + graph.createReference(n5, n1) + graph.createReference(n2, n4) + graph.createReference(n2, n5) + graph.createReference(n6, n2) + + outs, ins = graph.get_edges(n1) + + self.assertFalse(isinstance(outs, list)) + self.assertFalse(isinstance(ins, list)) + + ins = list(ins) + outs = list(outs) + + + self.assertTrue(n1 not in outs) + self.assertTrue(n2 in outs) + self.assertTrue(n3 in outs) + self.assertTrue(n4 not in outs) + self.assertTrue(n5 not in outs) + self.assertTrue(n6 not in outs) + + self.assertTrue(n1 not in ins) + self.assertTrue(n2 not in ins) + self.assertTrue(n3 in ins) + self.assertTrue(n4 not in ins) + self.assertTrue(n5 in ins) + self.assertTrue(n6 not in ins) + + def test_filterStack(self): + graph = ObjectGraph() + n1 = graph.createNode(ArgNode, "n1", 0) + n11 = graph.createNode(ArgNode, "n1.1", 1) + n12 = graph.createNode(ArgNode, "n1.2", 0) + n111 = graph.createNode(ArgNode, "n1.1.1", 0) + n112 = graph.createNode(ArgNode, "n1.1.2",2) + n2 = graph.createNode(ArgNode, "n2", 0) + n3 = graph.createNode(ArgNode, "n2", 0) + + graph.createReference(None, n1) + graph.createReference(None, n2) + graph.createReference(n1, n11) + graph.createReference(n1, n12) + graph.createReference(n11, n111) + graph.createReference(n11, n112) + + self.assertTrue(n1 in graph) + self.assertTrue(n2 in graph) + self.assertTrue(n11 in graph) + self.assertTrue(n12 in graph) + self.assertTrue(n111 in graph) + self.assertTrue(n112 in graph) + self.assertTrue(n2 in graph) + self.assertTrue(n3 in graph) + + visited, removes, orphans = graph.filterStack( + [lambda n: n.args[0] != 1, lambda n: n.args[0] != 2]) + + self.assertEqual(visited, 6) + self.assertEqual(removes, 2) + self.assertEqual(orphans, 1) + + e = graph.graph.edge_by_node(n1.graphident, n111.graphident) + self.assertEqual(graph.graph.edge_data(e), "orphan") + + self.assertTrue(n1 in graph) + self.assertTrue(n2 in graph) + self.assertTrue(n11 not in graph) + self.assertTrue(n12 in graph) + self.assertTrue(n111 in graph) + self.assertTrue(n112 not in graph) + self.assertTrue(n2 in graph) + self.assertTrue(n3 in graph) + + +class TestObjectGraphIO (unittest.TestCase): + def setUp(self): + self._stdout = sys.stdout + + def tearDown(self): + sys.stdout = self._stdout + + def test_msg(self): + graph = ObjectGraph() + + sys.stdout = fp = StringIO() + graph.msg(0, "foo") + self.assertEqual(fp.getvalue(), "foo \n") + + sys.stdout = fp = StringIO() + graph.msg(5, "foo") + self.assertEqual(fp.getvalue(), "") + + sys.stdout = fp = StringIO() + graph.debug = 10 + graph.msg(5, "foo") + self.assertEqual(fp.getvalue(), "foo \n") + + sys.stdout = fp = StringIO() + graph.msg(0, "foo", 1, "a") + self.assertEqual(fp.getvalue(), "foo 1 'a'\n") + + sys.stdout = fp = StringIO() + graph.msgin(0, "hello", "world") + graph.msg(0, "test me") + graph.msgout(0, "bye bye") + self.assertEqual(fp.getvalue(), "hello 'world'\n test me \nbye bye \n") + + +if __name__ == "__main__": # pragma: no cover + unittest.main() |